Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACNSPE_RS24055 Genome accession   NZ_CP183326
Coordinates   4768757..4769260 (+) Length   167 a.a.
NCBI ID   WP_057768003.1    Uniprot ID   A0A4R1ARF0
Organism   Cytobacillus praedii strain MM2025     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4763757..4774260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNSPE_RS24025 (ACNSPE_24025) - 4763925..4764767 (+) 843 WP_057768009.1 ParB/RepB/Spo0J family partition protein -
  ACNSPE_RS24030 (ACNSPE_24030) - 4764921..4765634 (+) 714 WP_419393162.1 DUF554 domain-containing protein -
  ACNSPE_RS24035 (ACNSPE_24035) yyaC 4765803..4766450 (-) 648 WP_057768007.1 spore protease YyaC -
  ACNSPE_RS24040 (ACNSPE_24040) - 4766780..4766977 (+) 198 WP_057768006.1 DUF951 domain-containing protein -
  ACNSPE_RS24045 (ACNSPE_24045) ychF 4767107..4768207 (+) 1101 WP_057768005.1 redox-regulated ATPase YchF -
  ACNSPE_RS24050 (ACNSPE_24050) rpsF 4768412..4768699 (+) 288 WP_057768004.1 30S ribosomal protein S6 -
  ACNSPE_RS24055 (ACNSPE_24055) ssbA 4768757..4769260 (+) 504 WP_057768003.1 single-stranded DNA-binding protein Machinery gene
  ACNSPE_RS24060 (ACNSPE_24060) rpsR 4769312..4769548 (+) 237 WP_053478822.1 30S ribosomal protein S18 -
  ACNSPE_RS24065 (ACNSPE_24065) - 4769807..4771798 (+) 1992 WP_057768002.1 methyl-accepting chemotaxis protein -
  ACNSPE_RS24070 (ACNSPE_24070) - 4771979..4772923 (+) 945 WP_419393163.1 YybS family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18837.72 Da        Isoelectric Point: 4.8282

>NTDB_id=1105314 ACNSPE_RS24055 WP_057768003.1 4768757..4769260(+) (ssbA) [Cytobacillus praedii strain MM2025]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRTFTNQQGEREADFINCVIWRKPAENVANFLKKGSLAGVDGRIQTR
SYEGQDGKRVYVTEVQAESVQFLEPRNSNKGEGAGYGSPREQDFPFGNNNQNQQPQYNRDNQGYTRVDKDPFANDGQIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1105314 ACNSPE_RS24055 WP_057768003.1 4768757..4769260(+) (ssbA) [Cytobacillus praedii strain MM2025]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCAGAATTGCGGTATACCCCAAATGGAGTGCCGGTTGC
AACTTTTACTCTTGCAGTAAATCGTACGTTTACGAATCAGCAAGGTGAACGAGAAGCGGACTTTATTAACTGTGTGATTT
GGAGAAAGCCAGCAGAGAACGTAGCAAACTTTTTGAAAAAGGGAAGTCTTGCAGGTGTAGATGGGCGAATTCAAACGCGT
AGTTATGAAGGCCAAGACGGAAAGCGCGTATATGTGACTGAAGTTCAGGCTGAAAGTGTTCAATTCTTAGAACCGCGCAA
TAGTAATAAAGGCGAAGGCGCTGGCTATGGCTCTCCTAGGGAACAGGATTTCCCATTTGGGAACAACAATCAGAATCAAC
AACCGCAGTACAACCGAGATAATCAGGGATATACACGTGTAGACAAAGATCCATTTGCCAATGACGGCCAAATTGATATT
TCAGATGATGATCTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R1ARF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.663

100

0.743
  ssb Latilactobacillus sakei subsp. sakei 23K

57.386

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.261

66.467

0.407

Multiple sequence alignment