Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   ACAK33_RS06545 Genome accession   NZ_AP031588
Coordinates   1356264..1360118 (+) Length   1284 a.a.
NCBI ID   WP_216076437.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JUNP712     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1351264..1365118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK33_RS06515 (JUNP712_1292) gmk 1351536..1352165 (-) 630 WP_000015937.1 guanylate kinase -
  ACAK33_RS06520 (JUNP712_1293) ispH 1352288..1353238 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACAK33_RS06525 (JUNP712_1294) fimU 1353408..1353881 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACAK33_RS06530 (JUNP712_1295) pilV 1353875..1354435 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACAK33_RS06535 (JUNP712_1296) pilW 1354436..1355437 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ACAK33_RS06540 (JUNP712_1297) pilX 1355434..1356252 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACAK33_RS06545 (JUNP712_1298) pilY1 1356264..1360118 (+) 3855 WP_216076437.1 VWA domain-containing protein Machinery gene
  ACAK33_RS06550 (JUNP712_1299) pilY2 1360129..1360611 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  ACAK33_RS06555 (JUNP712_1300) pilE 1360608..1361033 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene
  ACAK33_RS06560 (JUNP712_1301) rpsP 1361180..1361431 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ACAK33_RS06565 (JUNP712_1302) rimM 1361451..1361999 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  ACAK33_RS06570 (JUNP712_1303) trmD 1362045..1362785 (+) 741 WP_000464595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACAK33_RS06575 (JUNP712_1304) rplS 1362993..1363361 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  ACAK33_RS06580 (JUNP712_1305) - 1363413..1364354 (-) 942 WP_085916958.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1284 a.a.        Molecular weight: 138016.27 Da        Isoelectric Point: 7.1442

>NTDB_id=110514 ACAK33_RS06545 WP_216076437.1 1356264..1360118(+) (pilY1) [Acinetobacter baumannii strain JUNP712]
MKLKLKNFKPNNLWYAVCSSSMIFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSETNYAIRKDSYIKRVRRSDNRTEYSYCTNYRDSQIDTANLWQPCRSNSYWSSWSTNNPGVDNATAYDTSSDWTY
YYTYYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNATNSNAVYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTR
SASVMSTALGSTFGADFNCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLNSSDVKNACRLS
SRTQSDRKGDDACSPNQSTNAVAAPGYGNGGFFPTQSSQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEY
GYLRAFEPNPANTYLTWRGNLKKYHVVLSGANAGAFEANSGGLVYNASGAFRTGTKDYWNSSTYTDGGKVFLGGSYANVP
LPIAGQPETRDAEGNITKYYYAVQSKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPAAPPEETNPFDTVANTASYVLGK
FDPSTGQNILKAFPISLKLKILNYLGYSTDINATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDDNGNLTSAREQS
ILYGTMEGGLHIVDASSGIEQMVFVPADILNDSVASKALVVGQSDASAPAHGMDGAWVSDPAYNITTVGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLDVLSPTSPKLLFRIGADQNDYSRMGQSWSKPVLANIRYNGSIRRVLIVGGGYDQCYEKPNI
TLTDACFTNGKAKGNAVYIIDAKTGQRLWWTSDTGSNTDNANMKHSIVSRISTLDGDADGLVDHLYFGDLGGQIFRVDLN
NNQTKTNSTYSSFGVRVVRLANLATNDSTYDGTNDYTGGNAPRFYEPPTVTIHDYGIHTFITVGIASGDRSTPLDVYPLT
GREGMTPASALSGRPVNNVYGIIDRDFVKKNLMSLTDNQLETKDITRTGLRKNPQILRTGETRVAQIFFPTTGVGKGGWY
RSLSSTSDGTEKANNSFRIKGGLKAFEEPMAITGNLIILVYDPQGTGIVAADPCLPRVVGETDRQTYCLPFGACLNSDGS
IDQNKENHSGFETQTGTNCPVGASECNKNVIGSGIRSVTFVPTEDNPPTTNSCGKLKLSGNEQGTGQWQCTSHLVPTRWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=110514 ACAK33_RS06545 WP_216076437.1 1356264..1360118(+) (pilY1) [Acinetobacter baumannii strain JUNP712]
ATGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCGTCTGTTCAAGCTCAATGATATTCACATGGCT
GATGACAAGCTCTGTGGTGCAAGCAAGTGATTTACAAATTTATGCCTCACCTACAGCAGGTAAAAAAACAATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGTGAAAACCGCTTAGCCATGCTTAAAAATGGTATGAATGCT
TTTTTGGCTAGCAATAACCCTGTCTTAAATGATACGCGAGTAGGTTTAGGAAATTTCTCGGCAAATGGTGACAGCCGAAG
TGGACAAATTTTAGTGGCTGCTGCTCCTTTAGGTGATGCAAGTACTTTAAATACGGTAGGCTCACAACGTTATAAATTAA
AACAAGCTGTTGCTAATTTAACTGCGGGAGGCTCAACACCTTCAGCCCACGCTTATGCTGAAGCAGCTGCTTACTTAATG
GGGACAACCACATATTCAGAGACGAATTATGCTATTCGTAAAGATAGTTATATCAAACGTGTAAGAAGATCTGATAATAG
AACTGAATATTCATATTGTACTAATTACCGTGATTCGCAAATTGATACAGCCAACCTATGGCAACCTTGTCGTTCAAATA
GTTATTGGAGTAGCTGGTCAACAAATAATCCAGGTGTGGATAATGCTACTGCTTATGATACTTCATCTGACTGGACTTAT
TACTATACTTATTACTACACCACTTTTAATTATGCTGTAGCAAATGCAGATAGCGGTATTCCAAAATCTAAATCAAACGA
TACAGCTAGCAATCCGAATATTGTTGTAGACCGAAATGCTACTAACTCCAATGCAGTGTATCAGTCACCTTTACCTGCAG
TAGCGAATCGCCAGAGTTGTGATGGACAAGGTATTTACTTCTTATCGGATGGCGAACCGAACAATACAACAAATACACGT
TCGGCAAGTGTCATGTCGACTGCTTTAGGTAGTACTTTTGGAGCTGATTTTAATTGTTCTGGAGGTTTATCTAACACTAC
GGCAGACTCTGGTTGGGCTTGTATGGGAGAGTTTGCAAAAAGATTATTTGATAAAACAAAGAACCCTGCCGGAGTTTCTA
TTCAAACAGCATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTGAATTCTTCTGATGTAAAAAATGCCTGCCGTTTAAGT
TCGAGAACCCAGTCTGACCGAAAAGGAGATGATGCGTGTTCACCGAATCAATCTACAAATGCGGTAGCTGCACCAGGTTA
TGGAAATGGTGGTTTTTTCCCTACTCAGAGTTCACAAGGCGTAACAGACAGCGTTATCGCATTTATTAATAATTTAGATA
AAGTTCCTTTAGAACCCTTAACCACAGGTGCTATCTCAGTTCCATATGATGCATTGAATCCCAAAAATTTACAGGAATAT
GGTTATTTACGAGCTTTTGAGCCAAATCCAGCTAACACGTACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGT
TTTATCTGGAGCGAATGCTGGTGCTTTTGAGGCCAATTCTGGCGGATTAGTCTACAATGCAAGTGGGGCTTTTAGAACTG
GAACAAAGGATTATTGGAATAGCTCTACTTATACTGACGGAGGCAAAGTCTTTTTAGGTGGTTCATATGCGAATGTGCCT
TTACCCATTGCTGGACAACCTGAAACACGTGATGCAGAAGGGAATATCACAAAATATTATTACGCAGTACAAAGTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCCGTTGCAGCAGATGGTAGCTTAACGAAAATTTCAACTTCTGGAACTAATTTGC
TAAAAATTCCAGCTGCTCCACCAGAAGAAACTAATCCTTTTGATACGGTGGCTAATACAGCAAGTTATGTTTTAGGTAAA
TTTGATCCATCAACTGGACAAAATATTTTAAAAGCTTTTCCTATAAGCTTGAAATTAAAAATATTAAATTATTTAGGTTA
TTCAACAGATATTAATGCAACAACTCTGCCTTCATCTTTGGTTACATCGAATGAACCTTATTTATCGATGGGGGGAAGTA
TTCACTCTTTACCGGTTCAACTAACCTACAATGGAACCCTAGATGATAATGGGAATTTAACATCTGCCCGAGAACAATCC
ATCCTCTATGGAACTATGGAAGGCGGATTACATATTGTGGATGCTTCATCTGGTATTGAGCAAATGGTCTTTGTTCCTGC
AGATATTTTAAATGATTCAGTTGCTTCCAAAGCTTTAGTTGTTGGTCAAAGTGATGCTTCAGCTCCCGCTCATGGTATGG
ACGGAGCTTGGGTATCTGATCCAGCCTATAATATTACTACAGTGGGAAGTGGTAGCTCGGCAGTATCAAAAGTAACTGCA
AAGCAAATGAATATTTATGGCGGCATGCGTATGGGAGGAAGTAGCTACTACGGACTAGATGTATTAAGCCCTACTTCACC
GAAACTGCTTTTTAGAATAGGGGCAGACCAGAATGACTATAGCCGTATGGGTCAAAGCTGGTCTAAACCCGTACTCGCGA
ACATCCGTTATAACGGTTCTATTAGACGCGTCCTGATTGTTGGCGGTGGTTATGATCAGTGTTATGAAAAACCAAATATT
ACGTTGACTGACGCTTGCTTTACCAATGGAAAAGCAAAAGGAAATGCTGTCTATATTATTGACGCAAAAACTGGTCAGCG
TTTGTGGTGGACAAGTGATACAGGTTCTAATACTGATAACGCCAATATGAAGCATAGTATTGTTAGCCGTATTAGTACTT
TAGACGGTGATGCTGATGGCTTAGTCGACCATCTATATTTTGGAGATTTAGGCGGACAAATTTTTCGCGTAGACCTTAAT
AATAATCAGACAAAAACCAATTCGACCTATAGCAGTTTTGGTGTCAGAGTTGTGCGTTTAGCGAATTTAGCAACAAATGA
TTCAACTTATGATGGCACAAATGATTATACAGGTGGGAATGCTCCTCGTTTTTATGAGCCTCCAACAGTAACGATCCACG
ATTATGGAATTCACACTTTTATTACAGTAGGAATTGCATCAGGAGACCGTAGTACACCTTTAGATGTTTACCCACTCACA
GGTCGTGAAGGTATGACGCCTGCAAGTGCATTAAGTGGACGTCCTGTAAATAATGTATATGGAATTATTGATAGAGACTT
TGTTAAAAAGAACTTAATGTCTTTAACTGATAATCAGCTTGAAACAAAAGATATTACACGGACAGGCTTAAGAAAAAATC
CACAAATTCTAAGAACAGGTGAAACAAGAGTAGCTCAAATTTTCTTCCCAACTACAGGAGTAGGTAAAGGTGGTTGGTAT
CGCTCGCTTTCTAGTACGAGCGATGGTACAGAAAAAGCTAATAATAGTTTTCGTATTAAAGGAGGACTCAAAGCTTTTGA
GGAACCAATGGCAATTACGGGTAATTTAATTATTCTAGTTTATGACCCTCAAGGAACGGGAATTGTTGCGGCAGATCCTT
GCCTACCTCGTGTTGTGGGAGAAACAGACCGACAAACTTATTGTTTACCATTTGGAGCTTGTCTTAATTCTGATGGGTCA
ATCGATCAAAATAAAGAGAATCACAGTGGGTTTGAAACACAAACTGGTACTAATTGCCCAGTAGGGGCTTCTGAATGTAA
TAAAAACGTTATTGGCTCTGGTATTCGTAGCGTAACATTTGTACCAACGGAGGATAACCCACCTACGACTAATAGTTGTG
GGAAATTAAAGCTGTCTGGTAATGAGCAAGGGACTGGACAGTGGCAATGTACGAGTCATTTAGTTCCTACGCGTTGGTAT
GAGCGTTATCGTTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(715-964)

von Willebrand factor type A domain (VWA_2)

(51-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

89.922

100

0.903

Multiple sequence alignment