Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACAK33_RS06540 Genome accession   NZ_AP031588
Coordinates   1355434..1356252 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain JUNP712     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1350434..1361252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK33_RS06505 - 1351016..1351146 (-) 131 Protein_1248 hypothetical protein -
  ACAK33_RS06510 (JUNP712_1291) rpoZ 1351185..1351463 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACAK33_RS06515 (JUNP712_1292) gmk 1351536..1352165 (-) 630 WP_000015937.1 guanylate kinase -
  ACAK33_RS06520 (JUNP712_1293) ispH 1352288..1353238 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACAK33_RS06525 (JUNP712_1294) fimU 1353408..1353881 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACAK33_RS06530 (JUNP712_1295) pilV 1353875..1354435 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACAK33_RS06535 (JUNP712_1296) pilW 1354436..1355437 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ACAK33_RS06540 (JUNP712_1297) pilX 1355434..1356252 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACAK33_RS06545 (JUNP712_1298) pilY1 1356264..1360118 (+) 3855 WP_216076437.1 VWA domain-containing protein Machinery gene
  ACAK33_RS06550 (JUNP712_1299) pilY2 1360129..1360611 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  ACAK33_RS06555 (JUNP712_1300) pilE 1360608..1361033 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=110513 ACAK33_RS06540 WP_000149374.1 1355434..1356252(+) (pilX) [Acinetobacter baumannii strain JUNP712]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=110513 ACAK33_RS06540 WP_000149374.1 1355434..1356252(+) (pilX) [Acinetobacter baumannii strain JUNP712]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment