Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACNR9X_RS11960 Genome accession   NZ_CP183293
Coordinates   2474842..2475177 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain F68     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2469842..2480177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR9X_RS11940 (ACNR9X_11940) gcvT 2470453..2471553 (-) 1101 WP_058906182.1 glycine cleavage system aminomethyltransferase GcvT -
  ACNR9X_RS11945 (ACNR9X_11945) - 2471976..2473646 (+) 1671 WP_058906183.1 DEAD/DEAH box helicase -
  ACNR9X_RS11950 (ACNR9X_11950) - 2473664..2474458 (+) 795 WP_003153106.1 YqhG family protein -
  ACNR9X_RS11955 (ACNR9X_11955) sinI 2474635..2474808 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACNR9X_RS11960 (ACNR9X_11960) sinR 2474842..2475177 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACNR9X_RS11965 (ACNR9X_11965) tasA 2475225..2476010 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  ACNR9X_RS11970 (ACNR9X_11970) sipW 2476074..2476658 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ACNR9X_RS11975 (ACNR9X_11975) tapA 2476630..2477301 (-) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  ACNR9X_RS11980 (ACNR9X_11980) - 2477561..2477890 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  ACNR9X_RS11985 (ACNR9X_11985) - 2477930..2478109 (-) 180 WP_003153093.1 YqzE family protein -
  ACNR9X_RS11990 (ACNR9X_11990) comGG 2478166..2478543 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACNR9X_RS11995 (ACNR9X_11995) comGF 2478544..2479044 (-) 501 WP_224979425.1 competence type IV pilus minor pilin ComGF -
  ACNR9X_RS12000 (ACNR9X_12000) comGE 2478953..2479267 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACNR9X_RS12005 (ACNR9X_12005) comGD 2479251..2479688 (-) 438 WP_044053464.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACNR9X_RS12010 (ACNR9X_12010) comGC 2479678..2479986 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1105080 ACNR9X_RS11960 WP_003153104.1 2474842..2475177(+) (sinR) [Bacillus velezensis strain F68]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1105080 ACNR9X_RS11960 WP_003153104.1 2474842..2475177(+) (sinR) [Bacillus velezensis strain F68]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment