Detailed information NTG1104988

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACN08L_RS02560
• Genome accession: NZ_CP183285
• Coordinates: 414269..415138 (-)
• Length: 289 a.a.
• NCBI ID: WP_419237150.1
• Uniprot ID: -
• Organism: Photobacterium leiognathi subsp. mandapamensis strain Sr3.21
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 409269..420138

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN08L_RS02535 (ACN08L_02530)	secA	409389..412121 (+)	2733	WP_045063166.1	preprotein translocase subunit SecA	-
ACN08L_RS02540 (ACN08L_02535)	mutT	412211..412615 (-)	405	WP_305460309.1	8-oxo-dGTP diphosphatase MutT	-
ACN08L_RS02545 (ACN08L_02540)	yacG	412620..412841 (-)	222	WP_008987916.1	DNA gyrase inhibitor YacG	-
ACN08L_RS02550 (ACN08L_02545)	zapD	412849..413595 (-)	747	WP_042117295.1	cell division protein ZapD	-
ACN08L_RS02555 (ACN08L_02550)	coaE	413660..414265 (-)	606	WP_318423279.1	dephospho-CoA kinase	-
ACN08L_RS02560 (ACN08L_02555)	pilD	414269..415138 (-)	870	WP_419237150.1	prepilin peptidase	Machinery gene
ACN08L_RS02565 (ACN08L_02560)	pilC	415227..416450 (-)	1224	WP_305464597.1	type II secretion system F family protein	Machinery gene
ACN08L_RS02570 (ACN08L_02565)	pilB	416495..418180 (-)	1686	WP_419237151.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACN08L_RS02575 (ACN08L_02570)	pilA	418184..418573 (-)	390	WP_045068531.1	pilin	Machinery gene
ACN08L_RS02580 (ACN08L_02575)	nadC	418921..419808 (-)	888	WP_419238219.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32229.50 Da
• Isoelectric Point: 5.7521

>NTDB_id=1104988 ACN08L_RS02560 WP_419237150.1 414269..415138(-) (pilD) [Photobacterium leiognathi subsp. mandapamensis strain Sr3.21]
MAVLDYYPWLYPLFAVIFGLLVGSFLNVVIYRLPIMMERQWRKECQECFPEINAEQNDSVFNLSVPRSRCPHCNHAISAL
ENIPVISWLVLGGKCKECKAPISKRYPAIELLTAAMSLTVSLMLPPSWWSLAVIFFTFALIALTFIDIDKMLLPDQITLP
LMWAGIVLSVVGISPVSLTDSVIGAMAGYLSLWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGWQLLPFVVLLSSLVGA
LCGLVLLKMQDADNQTPFSFGPYLAIAGWIAMLWGAPIIDWYLTSYLGM

Nucleotide

• Length: 870 bp

>NTDB_id=1104988 ACN08L_RS02560 WP_419237150.1 414269..415138(-) (pilD) [Photobacterium leiognathi subsp. mandapamensis strain Sr3.21]
ATGGCAGTACTTGATTATTACCCTTGGCTTTACCCTCTTTTTGCCGTTATTTTTGGTTTGCTTGTCGGTAGCTTTTTAAA
TGTGGTGATCTATCGCCTGCCTATCATGATGGAGCGTCAATGGCGTAAAGAATGCCAAGAGTGTTTTCCTGAAATCAACG
CAGAGCAAAACGACAGCGTATTTAATTTAAGTGTGCCACGTTCACGCTGCCCGCACTGTAATCACGCCATTAGCGCGTTG
GAAAATATTCCTGTGATCAGTTGGCTAGTACTCGGCGGCAAATGCAAAGAATGCAAAGCACCGATCAGTAAACGTTACCC
TGCCATTGAGTTACTGACAGCCGCTATGAGCTTAACCGTATCATTAATGTTGCCACCATCATGGTGGTCACTGGCAGTGA
TCTTTTTCACCTTCGCATTAATCGCGCTAACCTTTATCGATATCGATAAAATGCTACTACCCGATCAAATCACCTTACCG
CTAATGTGGGCAGGTATCGTATTATCTGTAGTTGGTATTAGCCCTGTATCGCTAACCGATTCAGTGATTGGTGCGATGGC
TGGTTATTTATCGCTGTGGAGTGTGTTCTGGGTATTTAAACTGCTGACGAAAAAAGATGGCATGGGCTACGGTGACTTCA
AACTACTTGCCGCATTAGGTGCATGGCTTGGCTGGCAATTACTGCCTTTCGTTGTGTTATTATCATCTCTTGTCGGTGCG
TTATGTGGTCTTGTATTACTTAAGATGCAAGACGCTGATAACCAAACGCCATTCTCATTTGGTCCTTACCTTGCGATTGC
TGGATGGATCGCAATGCTTTGGGGCGCACCAATCATCGACTGGTATTTAACATCATACTTAGGAATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	62.63	100	0.626
pilD	Vibrio cholerae strain A1552	61.111	99.654	0.609
pilD	Acinetobacter baumannii D1279779	53.558	92.388	0.495
pilD	Acinetobacter nosocomialis M2	53.558	92.388	0.495
pilD	Neisseria gonorrhoeae MS11	47.518	97.578	0.464