Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACAK36_RS08560 Genome accession   NZ_AP031585
Coordinates   1766218..1766601 (-) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JUNP543     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1761218..1771601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK36_RS08545 (JUNP543_1713) - 1763110..1765188 (-) 2079 WP_045543732.1 methyl-accepting chemotaxis protein -
  ACAK36_RS08550 - 1765235..1765771 (-) 537 WP_045543731.1 chemotaxis protein CheW -
  ACAK36_RS08555 (JUNP543_1714) - 1765832..1766194 (-) 363 WP_000101096.1 PleD family two-component system response regulator -
  ACAK36_RS08560 (JUNP543_1715) pilG 1766218..1766601 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ACAK36_RS08565 (JUNP543_1716) - 1766884..1767522 (+) 639 WP_004739833.1 hypothetical protein -
  ACAK36_RS08570 (JUNP543_1717) - 1767582..1768700 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=110443 ACAK36_RS08560 WP_000389061.1 1766218..1766601(-) (pilG) [Acinetobacter baumannii strain JUNP543]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=110443 ACAK36_RS08560 WP_000389061.1 1766218..1766601(-) (pilG) [Acinetobacter baumannii strain JUNP543]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTTTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37

Multiple sequence alignment