Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACAK38_RS17945 Genome accession   NZ_AP031583
Coordinates   3730007..3730333 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain JUNP514     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3725007..3735333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK38_RS17925 (JUNP514_3578) - 3725113..3725742 (-) 630 WP_045544623.1 FHA domain-containing protein -
  ACAK38_RS17930 (JUNP514_3579) gspD 3725783..3728053 (-) 2271 WP_045544624.1 type II secretion system secretin GspD -
  ACAK38_RS17935 (JUNP514_3580) - 3728095..3728931 (-) 837 WP_045544625.1 type II secretion system protein N -
  ACAK38_RS17940 (JUNP514_3581) gspN 3728931..3729674 (-) 744 WP_045544626.1 type II secretion system protein N -
  ACAK38_RS17945 (JUNP514_3582) hns 3730007..3730333 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACAK38_RS17950 (JUNP514_3583) - 3730528..3730968 (-) 441 WP_000661569.1 thioesterase family protein -
  ACAK38_RS17955 (JUNP514_3584) - 3730976..3732169 (-) 1194 WP_045544627.1 membrane protein -
  ACAK38_RS17960 (JUNP514_3585) - 3732179..3733018 (-) 840 WP_045544628.1 hypothetical protein -
  ACAK38_RS17965 (JUNP514_3586) - 3733027..3733794 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  ACAK38_RS17970 (JUNP514_3587) hemC 3733799..3734716 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=110429 ACAK38_RS17945 WP_000801427.1 3730007..3730333(-) (hns) [Acinetobacter baumannii strain JUNP514]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=110429 ACAK38_RS17945 WP_000801427.1 3730007..3730333(-) (hns) [Acinetobacter baumannii strain JUNP514]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment