Detailed information NTG1103986

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACNSN2_RS12740
• Genome accession: NZ_CP183075
• Coordinates: 2728534..2729445 (+)
• Length: 303 a.a.
• NCBI ID: WP_418607614.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. US3C1013
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2723534..2734445

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNSN2_RS12720 (ACNSN2_12720)	ampD	2724204..2724749 (-)	546	WP_418607608.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACNSN2_RS12725 (ACNSN2_12725)	nadC	2725120..2725965 (+)	846	WP_418607610.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACNSN2_RS12730 (ACNSN2_12730)	-	2726474..2726923 (+)	450	WP_010391865.1	pilin	-
ACNSN2_RS12735 (ACNSN2_12735)	pilC	2727055..2728284 (+)	1230	WP_418607612.1	type II secretion system F family protein	Machinery gene
ACNSN2_RS12740 (ACNSN2_12740)	pilD	2728534..2729445 (+)	912	WP_418607614.1	prepilin peptidase	Machinery gene
ACNSN2_RS12745 (ACNSN2_12745)	coaE	2729448..2730077 (+)	630	WP_418607615.1	dephospho-CoA kinase	-
ACNSN2_RS12750 (ACNSN2_12750)	pilB	2730212..2731888 (+)	1677	WP_418607617.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACNSN2_RS12755 (ACNSN2_12755)	yacG	2731954..2732184 (+)	231	WP_010391853.1	DNA gyrase inhibitor YacG	-
ACNSN2_RS12760 (ACNSN2_12760)	-	2732244..2732732 (-)	489	WP_418607619.1	Spy/CpxP family protein refolding chaperone	-
ACNSN2_RS12765 (ACNSN2_12765)	-	2732899..2733588 (+)	690	WP_075169871.1	response regulator	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33404.55 Da
• Isoelectric Point: 4.9052

>NTDB_id=1103986 ACNSN2_RS12740 WP_418607614.1 2728534..2729445(+) (pilD) [Pseudoalteromonas sp. US3C1013]
MQSIFIDISNAMQANLWFYLTTVGLVSLCIGSFLNVVIYRLPLMMQKEWQTECRLLLADELTSPKTEQITSQTTDTFNLV
KPNSCCPKCEAAIKPWQNIPIFSWLFLKGKCATCDNPISVRYPTVEAITAILSLAVAYTFGVTEQALLYIVVTWALVALT
FVDIDHMLLPDQLTLPLLWLALIASVLGYTIAPSDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGW
QSLLTVILLSSVVGAVIGIALLSIQGKDKATPIPFGPYLAIAGWITMLWGTQLQNSYFNFIGY

Nucleotide

• Length: 912 bp

>NTDB_id=1103986 ACNSN2_RS12740 WP_418607614.1 2728534..2729445(+) (pilD) [Pseudoalteromonas sp. US3C1013]
ATGCAAAGTATTTTTATTGATATCAGCAACGCGATGCAAGCAAACCTATGGTTTTACTTGACCACGGTTGGCCTAGTAAG
TTTATGTATAGGTAGCTTTTTAAATGTAGTGATATATCGCTTGCCACTAATGATGCAAAAAGAATGGCAAACTGAATGCC
GCTTATTATTAGCCGATGAACTAACCAGCCCAAAGACTGAACAGATCACTTCACAAACTACTGACACGTTTAATTTAGTT
AAGCCCAACTCATGTTGTCCTAAGTGCGAAGCAGCCATTAAACCATGGCAAAACATTCCTATATTTAGTTGGTTATTTTT
AAAAGGTAAATGCGCAACCTGTGATAACCCAATCTCAGTGCGTTACCCAACCGTTGAAGCCATCACCGCTATTTTAAGTT
TAGCGGTTGCCTACACCTTTGGCGTAACAGAGCAGGCTTTATTGTACATTGTAGTGACTTGGGCATTGGTAGCACTGACT
TTTGTTGATATTGATCACATGCTACTGCCAGATCAGCTTACTTTGCCGCTTTTATGGCTGGCGTTAATCGCCTCAGTATT
GGGTTATACTATAGCCCCTAGCGATGCGATTATTGGTGCAGCATGTGGTTACTTAAGCTTATGGAGCGTGTTTTGGCTGT
TTAAGTTAATAACCGGCAAAGAAGGTATGGGTTATGGCGACTTTAAATTACTGGCGGTGTTTGGCGCACTGCTGGGTTGG
CAATCGTTATTGACCGTTATTTTACTTTCAAGCGTAGTTGGCGCTGTTATTGGCATTGCCCTACTGAGTATTCAAGGTAA
AGACAAAGCAACGCCTATTCCTTTTGGCCCTTACTTAGCAATAGCAGGTTGGATCACTATGCTATGGGGGACGCAACTGC
AAAACAGCTATTTTAATTTTATTGGCTACTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (151-259)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-140)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	50.171	96.7	0.485
pilD	Acinetobacter nosocomialis M2	50.171	96.7	0.485
pilD	Vibrio cholerae strain A1552	50.35	94.389	0.475
pilD	Vibrio campbellii strain DS40M4	48.464	96.7	0.469
pilD	Neisseria gonorrhoeae MS11	44.403	88.449	0.393