Detailed information NTG1103713

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACNR0F_RS06485
• Genome accession: NZ_CP183037
• Coordinates: 1190108..1191016 (-)
• Length: 302 a.a.
• NCBI ID: WP_032828171.1
• Uniprot ID: -
• Organism: Kingella kingae strain URMC_2412A945
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1185108..1196016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNR0F_RS06460 (ACNR0F_06460)	-	1186213..1187406 (+)	1194	WP_003787791.1	acetate kinase	-
ACNR0F_RS06465 (ACNR0F_06465)	-	1187496..1188116 (-)	621	WP_003790910.1	L-threonylcarbamoyladenylate synthase	-
ACNR0F_RS06470 (ACNR0F_06470)	pncC	1188126..1188602 (-)	477	WP_003787789.1	nicotinamide-nucleotide amidase	-
ACNR0F_RS06475 (ACNR0F_06475)	zapD	1188622..1189383 (-)	762	WP_003790912.1	cell division protein ZapD	-
ACNR0F_RS06480 (ACNR0F_06480)	coaE	1189498..1190106 (-)	609	WP_003787784.1	dephospho-CoA kinase	-
ACNR0F_RS06485 (ACNR0F_06485)	pilD	1190108..1191016 (-)	909	WP_032828171.1	prepilin peptidase	Machinery gene
ACNR0F_RS06490 (ACNR0F_06490)	-	1191019..1192288 (-)	1270	Protein_1270	type II secretion system F family protein	-
ACNR0F_RS06495 (ACNR0F_06495)	pilF	1192335..1194020 (-)	1686	WP_003787777.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACNR0F_RS06500 (ACNR0F_06500)	lysA	1194206..1195432 (-)	1227	WP_032134244.1	diaminopimelate decarboxylase	-
ACNR0F_RS06505 (ACNR0F_06505)	lptM	1195404..1195598 (-)	195	WP_003790918.1	LPS translocon maturation chaperone LptM	-
ACNR0F_RS06510 (ACNR0F_06510)	cyaY	1195689..1196012 (+)	324	WP_099046165.1	iron donor protein CyaY	-

Sequence

Protein

• Length: 302 a.a.
• Molecular weight: 33507.82 Da
• Isoelectric Point: 7.8660

>NTDB_id=1103713 ACNR0F_RS06485 WP_032828171.1 1190108..1191016(-) (pilD) [Kingella kingae strain URMC_2412A945]
MGEVYFTIIVALLFGLLIGSFLNVVIYRLPVMLNRDWTEAACEQLNINDEFWQKQPASVEQGLREHFGLNRAVSGTFNLM
TPPSRCGNCGSAVRPWQNIPVLSWLMLRGKCAGCHKPISIRYPLVELLTGVLFAVMAFKYGWTWYTVGACLFTAYVVAMT
FIDADTQLLPDDLTIPLMRWGLLFNLLTGFIPLTQSVWGMLIGYMSLWTLSQTYKLIRGVDGMGAGDFKMLAAIGAWLGA
WILPVVIFAAAMVFLVVAIIRGIGKEQPMAYGPCLGVAGWLVFLFYDVVMRGVTAWLTGSGF

Nucleotide

• Length: 909 bp

>NTDB_id=1103713 ACNR0F_RS06485 WP_032828171.1 1190108..1191016(-) (pilD) [Kingella kingae strain URMC_2412A945]
GTGGGTGAGGTTTATTTTACGATTATAGTTGCGCTACTTTTCGGCTTACTTATCGGCAGCTTTTTAAATGTGGTCATTTA
TCGGCTGCCCGTGATGCTCAATCGCGATTGGACAGAAGCAGCCTGCGAGCAACTCAATATCAACGATGAATTTTGGCAAA
AGCAGCCTGCATCCGTAGAACAAGGTCTGCGCGAACACTTTGGCTTAAACCGTGCTGTGTCAGGCACATTCAACTTGATG
ACACCGCCATCGCGTTGTGGCAACTGCGGTTCAGCCGTGCGTCCTTGGCAAAACATTCCTGTGTTGAGCTGGTTGATGTT
GCGTGGCAAATGTGCAGGCTGCCACAAACCCATTAGCATTCGCTATCCTTTGGTAGAACTACTCACAGGCGTGTTGTTTG
CGGTAATGGCATTCAAGTATGGCTGGACTTGGTACACCGTAGGCGCGTGTTTGTTTACCGCTTATGTCGTTGCCATGACC
TTTATTGATGCCGACACCCAACTTTTGCCCGATGACTTAACCATTCCATTGATGCGCTGGGGCTTGTTGTTTAACTTGCT
TACAGGCTTCATTCCGCTAACGCAATCGGTTTGGGGCATGTTGATTGGCTACATGAGTCTGTGGACGCTGTCGCAAACCT
ATAAACTAATTCGTGGCGTGGACGGCATGGGCGCAGGCGATTTCAAAATGCTGGCTGCGATTGGTGCGTGGCTGGGTGCA
TGGATTTTGCCTGTGGTGATTTTTGCTGCGGCGATGGTGTTTTTGGTGGTTGCCATTATTCGGGGCATTGGCAAAGAACA
GCCAATGGCATACGGCCCGTGTTTGGGCGTTGCCGGCTGGTTGGTCTTTTTGTTTTACGATGTGGTGATGCGTGGCGTAA
CAGCTTGGCTCACTGGGTCGGGTTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (152-258)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	50.853	97.02	0.493
pilD	Vibrio cholerae strain A1552	41.667	95.364	0.397
pilD	Acinetobacter baumannii D1279779	41.404	94.371	0.391
pilD	Vibrio campbellii strain DS40M4	41.429	92.715	0.384
pilD	Acinetobacter nosocomialis M2	40.702	94.371	0.384