Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACLM40_RS04725 | Genome accession | NZ_CP182859 |
| Coordinates | 1036915..1037361 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae strain APPFJLYC01 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1031915..1042361
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLM40_RS04700 (ACLM40_04700) | yacG | 1032822..1033010 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| ACLM40_RS04705 (ACLM40_04705) | coaE | 1032992..1033630 (-) | 639 | WP_005601202.1 | dephospho-CoA kinase | - |
| ACLM40_RS04710 (ACLM40_04710) | - | 1033652..1034290 (-) | 639 | WP_005604550.1 | prepilin peptidase | - |
| ACLM40_RS04715 (ACLM40_04715) | pilC | 1034317..1035519 (-) | 1203 | WP_012263006.1 | type II secretion system F family protein | Machinery gene |
| ACLM40_RS04720 (ACLM40_04720) | pilB | 1035503..1036897 (-) | 1395 | WP_005601209.1 | GspE/PulE family protein | Machinery gene |
| ACLM40_RS04725 (ACLM40_04725) | pilA | 1036915..1037361 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ACLM40_RS04730 (ACLM40_04730) | radA | 1037543..1038922 (+) | 1380 | WP_005601211.1 | DNA repair protein RadA | Machinery gene |
| ACLM40_RS04735 (ACLM40_04735) | - | 1038966..1039199 (-) | 234 | WP_005597399.1 | YgjV family protein | - |
| ACLM40_RS04740 (ACLM40_04740) | folA | 1039326..1039814 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| ACLM40_RS04745 (ACLM40_04745) | proB | 1039901..1040992 (+) | 1092 | WP_005601213.1 | glutamate 5-kinase | - |
| ACLM40_RS04750 (ACLM40_04750) | - | 1041005..1041781 (+) | 777 | WP_005597402.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=1102756 ACLM40_RS04725 WP_005597397.1 1036915..1037361(-) (pilA) [Actinobacillus pleuropneumoniae strain APPFJLYC01]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=1102756 ACLM40_RS04725 WP_005597397.1 1036915..1037361(-) (pilA) [Actinobacillus pleuropneumoniae strain APPFJLYC01]
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACGGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACGGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |