Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACNFKI_RS18445 Genome accession   NZ_CP182571
Coordinates   3650458..3651147 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain DY201     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3645458..3656147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKI_RS18410 (ACNFKI_18410) - 3645656..3646138 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACNFKI_RS18415 (ACNFKI_18415) flgM 3646153..3646419 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACNFKI_RS18420 (ACNFKI_18420) - 3646489..3646908 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACNFKI_RS18425 (ACNFKI_18425) comFC 3646982..3647671 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  ACNFKI_RS18430 (ACNFKI_18430) - 3647677..3647961 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACNFKI_RS18435 (ACNFKI_18435) comFA 3648019..3649404 (-) 1386 WP_418134191.1 DEAD/DEAH box helicase Machinery gene
  ACNFKI_RS18440 (ACNFKI_18440) - 3649512..3650360 (-) 849 WP_003151387.1 DegV family protein -
  ACNFKI_RS18445 (ACNFKI_18445) degU 3650458..3651147 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACNFKI_RS18450 (ACNFKI_18450) degS 3651224..3652387 (-) 1164 WP_418134194.1 two-component sensor histidine kinase DegS Regulator
  ACNFKI_RS18455 (ACNFKI_18455) - 3652610..3653257 (+) 648 WP_060657503.1 YigZ family protein -
  ACNFKI_RS18460 (ACNFKI_18460) - 3653262..3654476 (+) 1215 WP_003151383.1 LCP family protein -
  ACNFKI_RS18465 (ACNFKI_18465) - 3654566..3655642 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1102306 ACNFKI_RS18445 WP_003219701.1 3650458..3651147(-) (degU) [Bacillus velezensis strain DY201]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1102306 ACNFKI_RS18445 WP_003219701.1 3650458..3651147(-) (degU) [Bacillus velezensis strain DY201]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATACTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment