Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACNFKI_RS18435 Genome accession   NZ_CP182571
Coordinates   3648019..3649404 (-) Length   461 a.a.
NCBI ID   WP_418134191.1    Uniprot ID   -
Organism   Bacillus velezensis strain DY201     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3643019..3654404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKI_RS18400 (ACNFKI_18400) flgL 3643194..3644111 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACNFKI_RS18405 (ACNFKI_18405) flgK 3644123..3645640 (-) 1518 WP_052586766.1 flagellar hook-associated protein FlgK -
  ACNFKI_RS18410 (ACNFKI_18410) - 3645656..3646138 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACNFKI_RS18415 (ACNFKI_18415) flgM 3646153..3646419 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACNFKI_RS18420 (ACNFKI_18420) - 3646489..3646908 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACNFKI_RS18425 (ACNFKI_18425) comFC 3646982..3647671 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  ACNFKI_RS18430 (ACNFKI_18430) - 3647677..3647961 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACNFKI_RS18435 (ACNFKI_18435) comFA 3648019..3649404 (-) 1386 WP_418134191.1 DEAD/DEAH box helicase Machinery gene
  ACNFKI_RS18440 (ACNFKI_18440) - 3649512..3650360 (-) 849 WP_003151387.1 DegV family protein -
  ACNFKI_RS18445 (ACNFKI_18445) degU 3650458..3651147 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACNFKI_RS18450 (ACNFKI_18450) degS 3651224..3652387 (-) 1164 WP_418134194.1 two-component sensor histidine kinase DegS Regulator
  ACNFKI_RS18455 (ACNFKI_18455) - 3652610..3653257 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52610.15 Da        Isoelectric Point: 10.2976

>NTDB_id=1102305 ACNFKI_RS18435 WP_418134191.1 3648019..3649404(-) (comFA) [Bacillus velezensis strain DY201]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKAYITAEPSIIRRKNRYVCQRCGQSDQACFATFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWRPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKYFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1102305 ACNFKI_RS18435 WP_418134191.1 3648019..3649404(-) (comFA) [Bacillus velezensis strain DY201]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGCATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGACATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAGGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTTGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGATATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTGCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAATATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment