Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACNFKI_RS18425 Genome accession   NZ_CP182571
Coordinates   3646982..3647671 (-) Length   229 a.a.
NCBI ID   WP_197080391.1    Uniprot ID   -
Organism   Bacillus velezensis strain DY201     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3641982..3652671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKI_RS18390 (ACNFKI_18390) fliW 3642073..3642504 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  ACNFKI_RS18395 (ACNFKI_18395) - 3642534..3643103 (-) 570 WP_024085861.1 DUF6470 family protein -
  ACNFKI_RS18400 (ACNFKI_18400) flgL 3643194..3644111 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACNFKI_RS18405 (ACNFKI_18405) flgK 3644123..3645640 (-) 1518 WP_052586766.1 flagellar hook-associated protein FlgK -
  ACNFKI_RS18410 (ACNFKI_18410) - 3645656..3646138 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACNFKI_RS18415 (ACNFKI_18415) flgM 3646153..3646419 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACNFKI_RS18420 (ACNFKI_18420) - 3646489..3646908 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACNFKI_RS18425 (ACNFKI_18425) comFC 3646982..3647671 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  ACNFKI_RS18430 (ACNFKI_18430) - 3647677..3647961 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACNFKI_RS18435 (ACNFKI_18435) comFA 3648019..3649404 (-) 1386 WP_418134191.1 DEAD/DEAH box helicase Machinery gene
  ACNFKI_RS18440 (ACNFKI_18440) - 3649512..3650360 (-) 849 WP_003151387.1 DegV family protein -
  ACNFKI_RS18445 (ACNFKI_18445) degU 3650458..3651147 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACNFKI_RS18450 (ACNFKI_18450) degS 3651224..3652387 (-) 1164 WP_418134194.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25340.04 Da        Isoelectric Point: 8.4899

>NTDB_id=1102304 ACNFKI_RS18425 WP_197080391.1 3646982..3647671(-) (comFC) [Bacillus velezensis strain DY201]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEDPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKHSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1102304 ACNFKI_RS18425 WP_197080391.1 3646982..3647671(-) (comFC) [Bacillus velezensis strain DY201]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGACCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGCACTCATTAGCTCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment