Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACNFKI_RS13530 Genome accession   NZ_CP182571
Coordinates   2714751..2715086 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain DY201     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2709751..2720086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKI_RS13510 (ACNFKI_13510) gcvT 2710361..2711461 (-) 1101 WP_303302216.1 glycine cleavage system aminomethyltransferase GcvT -
  ACNFKI_RS13515 (ACNFKI_13515) - 2711885..2713555 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  ACNFKI_RS13520 (ACNFKI_13520) - 2713573..2714367 (+) 795 WP_003153106.1 YqhG family protein -
  ACNFKI_RS13525 (ACNFKI_13525) sinI 2714544..2714717 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACNFKI_RS13530 (ACNFKI_13530) sinR 2714751..2715086 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACNFKI_RS13535 (ACNFKI_13535) tasA 2715134..2715919 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  ACNFKI_RS13540 (ACNFKI_13540) sipW 2715983..2716567 (-) 585 WP_003153100.1 signal peptidase I SipW -
  ACNFKI_RS13545 (ACNFKI_13545) tapA 2716539..2717210 (-) 672 WP_046559874.1 amyloid fiber anchoring/assembly protein TapA -
  ACNFKI_RS13550 (ACNFKI_13550) - 2717469..2717798 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  ACNFKI_RS13555 (ACNFKI_13555) - 2717838..2718017 (-) 180 WP_003153093.1 YqzE family protein -
  ACNFKI_RS13560 (ACNFKI_13560) comGG 2718074..2718451 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACNFKI_RS13565 (ACNFKI_13565) comGF 2718452..2718952 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  ACNFKI_RS13570 (ACNFKI_13570) comGE 2718861..2719175 (-) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  ACNFKI_RS13575 (ACNFKI_13575) comGD 2719159..2719596 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACNFKI_RS13580 (ACNFKI_13580) comGC 2719586..2719894 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1102279 ACNFKI_RS13530 WP_003153104.1 2714751..2715086(+) (sinR) [Bacillus velezensis strain DY201]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1102279 ACNFKI_RS13530 WP_003153104.1 2714751..2715086(+) (sinR) [Bacillus velezensis strain DY201]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment