Detailed information NTG1101630

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACM613_RS05770
• Genome accession: NZ_CP182485
• Coordinates: 1231526..1232449 (-)
• Length: 307 a.a.
• NCBI ID: WP_254856746.1
• Uniprot ID: -
• Organism: Opacimonas sp. LMIT016
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1226526..1237449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM613_RS05745 (ACM613_05745)	mutT	1228618..1229022 (+)	405	WP_254856739.1	8-oxo-dGTP diphosphatase MutT	-
ACM613_RS05750 (ACM613_05750)	-	1229012..1229884 (-)	873	WP_254856741.1	aspartoacylase	-
ACM613_RS05755 (ACM613_05755)	yacG	1229890..1230120 (-)	231	WP_254856743.1	DNA gyrase inhibitor YacG	-
ACM613_RS05760 (ACM613_05760)	zapD	1230120..1230872 (-)	753	WP_254856744.1	cell division protein ZapD	-
ACM613_RS05765 (ACM613_05765)	coaE	1230912..1231526 (-)	615	WP_254856745.1	dephospho-CoA kinase	-
ACM613_RS05770 (ACM613_05770)	pilD	1231526..1232449 (-)	924	WP_254856746.1	prepilin peptidase	Machinery gene
ACM613_RS05775 (ACM613_05775)	pilC	1232489..1233700 (-)	1212	WP_254856747.1	type II secretion system F family protein	Machinery gene
ACM613_RS05780 (ACM613_05780)	-	1233789..1234187 (-)	399	WP_418026110.1	pilin	-
ACM613_RS05785 (ACM613_05785)	nadC	1234356..1235273 (-)	918	WP_254856749.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACM613_RS05790 (ACM613_05790)	-	1235270..1235848 (-)	579	WP_254856750.1	retropepsin-like aspartic protease family protein	-
ACM613_RS05795 (ACM613_05795)	ampD	1235876..1236448 (+)	573	WP_418026122.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACM613_RS05800 (ACM613_05800)	ampE	1236445..1237269 (+)	825	WP_254856752.1	regulatory signaling modulator protein AmpE	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34266.79 Da
• Isoelectric Point: 7.3239

>NTDB_id=1101630 ACM613_RS05770 WP_254856746.1 1231526..1232449(-) (pilD) [Opacimonas sp. LMIT016]
MNIFESIAFTFTTYPLAFLVTVCLLGLLVGSFLNVVIYRLPIMMQREWQSEFIHYFAPKERPDPPGGIALSDKFNLAHPR
SACPNCKRLITATENIPIVSYLLKKGRCQHCDHSIPKRYPIIEGMSALLSLWCALHYGPTLQCAVMLIATWTLISAVCID
LDHMLLPDQLTLPLLWMGLLSATQNWFVSLEDAVWGAVIGYLILWIIYWGFKLLTGKEGMGYGDFKLLAALGAFVGWQHL
VLIILLSSVVALAVALIAQVFPNQKQPDPSLPKGAFPFGPFLGIAGWITILYGETIVTWYFAWMGIA

Nucleotide

• Length: 924 bp

>NTDB_id=1101630 ACM613_RS05770 WP_254856746.1 1231526..1232449(-) (pilD) [Opacimonas sp. LMIT016]
ATGAATATCTTTGAATCCATCGCTTTCACCTTTACTACCTACCCACTTGCATTCTTAGTAACGGTTTGTTTGTTAGGTTT
ATTAGTCGGTAGCTTTTTAAACGTGGTGATCTATCGATTACCCATTATGATGCAACGCGAATGGCAATCTGAATTCATTC
ATTATTTTGCTCCAAAAGAACGACCAGACCCTCCCGGAGGTATTGCCTTAAGTGACAAATTTAATCTTGCTCACCCACGT
TCAGCATGTCCTAATTGTAAGCGCTTGATTACGGCGACAGAAAACATCCCGATTGTATCTTACCTGCTCAAAAAAGGGCG
CTGTCAACATTGTGATCACTCTATCCCTAAACGCTACCCGATAATTGAGGGAATGTCCGCCTTGCTTTCATTATGGTGTG
CTTTGCATTATGGACCAACACTACAATGTGCCGTTATGCTGATCGCCACTTGGACATTAATCAGCGCAGTATGTATAGAT
TTGGACCACATGTTATTGCCTGACCAACTAACCTTACCTTTGTTGTGGATGGGATTATTAAGCGCAACCCAAAACTGGTT
TGTGTCGTTAGAGGATGCCGTATGGGGAGCCGTTATTGGGTATCTCATACTGTGGATTATTTATTGGGGATTTAAGCTTC
TCACGGGCAAAGAAGGCATGGGCTATGGTGATTTTAAGTTACTAGCCGCATTAGGAGCTTTTGTTGGATGGCAACATTTA
GTCCTCATCATTTTATTATCATCTGTGGTTGCCCTAGCCGTTGCTTTGATCGCACAAGTTTTCCCGAATCAAAAACAACC
TGATCCATCTCTTCCCAAGGGCGCATTTCCCTTCGGTCCTTTTTTGGGCATTGCCGGCTGGATTACTATTCTTTATGGTG
AAACGATTGTTACCTGGTATTTTGCATGGATGGGGATAGCCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-137)

• Type IV leader peptidase family (Peptidase_A24) (148-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.189	96.743	0.505
pilD	Vibrio campbellii strain DS40M4	48.98	95.765	0.469
pilD	Acinetobacter nosocomialis M2	44.631	97.068	0.433
pilD	Acinetobacter baumannii D1279779	44.295	97.068	0.43
pilD	Neisseria gonorrhoeae MS11	44.84	91.531	0.41