Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACNJYY_RS21895 Genome accession   NZ_CP182294
Coordinates   4186230..4186775 (-) Length   181 a.a.
NCBI ID   WP_066399530.1    Uniprot ID   -
Organism   Fictibacillus sp. JL2B1089     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4181230..4191775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJYY_RS21875 (ACNJYY_21875) rplI 4182134..4182577 (-) 444 WP_197195446.1 50S ribosomal protein L9 -
  ACNJYY_RS21880 (ACNJYY_21880) - 4182574..4184547 (-) 1974 WP_416730113.1 DHH family phosphoesterase -
  ACNJYY_RS21885 (ACNJYY_21885) - 4184559..4185503 (-) 945 WP_416730114.1 YybS family protein -
  ACNJYY_RS21890 (ACNJYY_21890) rpsR 4185939..4186172 (-) 234 WP_066399523.1 30S ribosomal protein S18 -
  ACNJYY_RS21895 (ACNJYY_21895) ssbA 4186230..4186775 (-) 546 WP_066399530.1 single-stranded DNA-binding protein Machinery gene
  ACNJYY_RS21900 (ACNJYY_21900) rpsF 4186797..4187087 (-) 291 WP_066399533.1 30S ribosomal protein S6 -
  ACNJYY_RS21905 (ACNJYY_21905) ychF 4187487..4188584 (-) 1098 WP_416730115.1 redox-regulated ATPase YchF -
  ACNJYY_RS21910 (ACNJYY_21910) - 4188780..4188977 (-) 198 WP_137791311.1 DUF951 domain-containing protein -
  ACNJYY_RS21915 (ACNJYY_21915) - 4188992..4189876 (-) 885 WP_416730116.1 mechanosensitive ion channel family protein -
  ACNJYY_RS21920 (ACNJYY_21920) yyaC 4190100..4190732 (+) 633 WP_416730117.1 spore protease YyaC -
  ACNJYY_RS21925 (ACNJYY_21925) - 4190775..4191509 (-) 735 WP_416730118.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20050.87 Da        Isoelectric Point: 4.9528

>NTDB_id=1101047 ACNJYY_RS21895 WP_066399530.1 4186230..4186775(-) (ssbA) [Fictibacillus sp. JL2B1089]
MLNRVVLVGRLTKDPELKYTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVMAESVQFLEPKNANAGGQQYQGNSNNFGGPSNDRGFGQQNQNRSYGSDNGFGGQQQQQNPKRNNF
NDDPFANDGTPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1101047 ACNJYY_RS21895 WP_066399530.1 4186230..4186775(-) (ssbA) [Fictibacillus sp. JL2B1089]
ATGCTAAATCGAGTAGTACTGGTGGGACGTTTAACAAAAGACCCAGAATTAAAGTACACTCCAAACGGTGTGGCTGTTGC
TAACTTCACACTTGCTGTAAATCGACCTTTTTCGAATCAGCAAGGTGAGCGCGAAGCAGATTTTATTAACTGTGTCGTAT
GGCGTAAGCCCGCTGAAAATGTAGCGAACTTCTTGAAAAAGGGATCGCTTGCAGGAGTGGATGGACGTTTGCAAACTCGT
TCTTACGAGAACCAGCAGGGTCAAAGAGTGTATGTTACTGAAGTAATGGCAGAAAGTGTTCAATTCCTTGAACCTAAAAA
CGCTAATGCTGGAGGCCAGCAATATCAAGGCAACAGCAACAACTTTGGTGGACCATCAAATGACCGCGGATTTGGGCAGC
AAAATCAGAACCGCAGCTATGGAAGTGACAACGGCTTTGGAGGACAGCAACAACAGCAGAATCCAAAACGTAATAACTTC
AACGATGACCCGTTTGCAAATGATGGCACGCCGATCGACATCTCTGATGACGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.109

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

59.016

100

0.597
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment