Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACNJYY_RS18815 Genome accession   NZ_CP182294
Coordinates   3538033..3539094 (-) Length   353 a.a.
NCBI ID   WP_416729637.1    Uniprot ID   -
Organism   Fictibacillus sp. JL2B1089     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3533033..3544094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJYY_RS18785 (ACNJYY_18785) flgL 3533564..3534460 (-) 897 WP_416729631.1 flagellar hook-associated protein FlgL -
  ACNJYY_RS18790 (ACNJYY_18790) flgK 3534471..3536006 (-) 1536 WP_416729632.1 flagellar hook-associated protein FlgK -
  ACNJYY_RS18795 (ACNJYY_18795) - 3536025..3536483 (-) 459 WP_416729633.1 flagellar protein FlgN -
  ACNJYY_RS18800 (ACNJYY_18800) flgM 3536494..3536760 (-) 267 WP_416729634.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACNJYY_RS18805 (ACNJYY_18805) - 3536848..3537243 (-) 396 WP_416729635.1 TIGR03826 family flagellar region protein -
  ACNJYY_RS18810 (ACNJYY_18810) - 3537326..3538036 (-) 711 WP_416729636.1 ComF family protein -
  ACNJYY_RS18815 (ACNJYY_18815) comFA 3538033..3539094 (-) 1062 WP_416729637.1 DEAD/DEAH box helicase Machinery gene
  ACNJYY_RS18820 (ACNJYY_18820) - 3539579..3540427 (-) 849 WP_416729638.1 DegV family protein -
  ACNJYY_RS18825 (ACNJYY_18825) - 3540557..3541477 (-) 921 WP_416731909.1 ROK family protein -
  ACNJYY_RS18830 (ACNJYY_18830) - 3541636..3543429 (+) 1794 WP_416729639.1 ATP-binding protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 39970.39 Da        Isoelectric Point: 10.2071

>NTDB_id=1101038 ACNJYY_RS18815 WP_416729637.1 3538033..3539094(-) (comFA) [Fictibacillus sp. JL2B1089]
MNWTHENNLYWNGELSSGQQVASERFVERIGSEGELLIWAVCGAGKTEVLFKGIKKALNLGLRVCIATPRTDVVLELAPR
LKAVFPYTMIASYYGGSEERETPAQLVISTTHQLYRFKQAFNIMIVDEVDAFPYSYDKTLLHAVSRAVKPKHFLLYLSAT
PSKTMKKAAMNERLPCVKIPKRFHGFPLPVPKMVWGGEWKKRLERGKLPSPFLKWLKTQSESRRRAMIFVSSVSVLEKLT
EIIRKEVDVSVDSVHAEDPLRKEKVIQFRNQDTQLLVTTTILERGVTVPFLDVAVFGADHNVFTESALVQIAGRAGRSKE
DHNGKVLLFHYGKSLSMIQATNHIKNTNKEARS

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1101038 ACNJYY_RS18815 WP_416729637.1 3538033..3539094(-) (comFA) [Fictibacillus sp. JL2B1089]
GTGAATTGGACTCATGAAAATAATCTATACTGGAATGGTGAGTTGTCGAGTGGCCAGCAAGTAGCATCAGAGAGATTTGT
GGAGCGAATTGGAAGTGAAGGTGAATTATTGATTTGGGCGGTGTGTGGAGCGGGGAAGACAGAAGTTCTGTTTAAAGGGA
TTAAAAAAGCATTAAACCTCGGCCTTCGAGTCTGTATAGCGACTCCTCGAACCGATGTTGTACTAGAGTTAGCTCCTCGA
TTAAAAGCCGTTTTTCCATACACGATGATTGCGAGTTATTATGGTGGTTCAGAAGAACGTGAAACACCAGCGCAACTCGT
AATCTCTACCACACACCAGCTGTACCGATTTAAACAAGCGTTTAACATCATGATCGTCGATGAAGTCGATGCCTTTCCGT
ATTCCTACGATAAAACCCTTCTACATGCGGTATCTCGCGCAGTTAAACCCAAACACTTTCTTCTCTATTTATCAGCTACT
CCTTCTAAAACAATGAAAAAAGCAGCAATGAATGAAAGATTACCATGTGTGAAAATCCCAAAACGGTTTCATGGATTTCC
ATTACCTGTTCCAAAAATGGTTTGGGGTGGTGAGTGGAAGAAGAGGTTAGAAAGAGGAAAACTACCTTCTCCTTTTCTTA
AGTGGTTGAAGACTCAGTCTGAAAGTAGACGACGAGCGATGATATTTGTATCTTCAGTATCCGTTTTAGAAAAGCTGACA
GAAATTATAAGGAAGGAAGTTGATGTATCTGTTGACAGTGTTCATGCAGAAGATCCACTCAGGAAAGAAAAAGTAATCCA
GTTTAGGAATCAAGATACTCAATTATTAGTTACAACTACCATACTAGAACGCGGAGTTACTGTTCCGTTTTTAGATGTTG
CAGTGTTTGGTGCTGATCATAACGTATTCACAGAAAGTGCCCTCGTTCAAATAGCAGGACGAGCAGGTAGAAGTAAGGAA
GATCATAACGGTAAGGTACTTCTGTTTCATTACGGTAAATCACTCAGCATGATACAAGCGACCAATCATATTAAAAACAC
GAACAAGGAGGCTCGGAGTTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(212-318)

Type III restriction enzyme, res subunit (ResIII)

(14-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

55.462

100

0.561
  comFA Latilactobacillus sakei subsp. sakei 23K

41.972

100

0.422
  comFA/cflA Streptococcus mitis SK321

40.113

100

0.402
  comFA/cflA Streptococcus pneumoniae Rx1

38.983

100

0.391
  comFA/cflA Streptococcus pneumoniae D39

38.983

100

0.391
  comFA/cflA Streptococcus pneumoniae R6

38.983

100

0.391
  comFA/cflA Streptococcus pneumoniae TIGR4

38.983

100

0.391
  comFA/cflA Streptococcus mitis NCTC 12261

38.92

99.717

0.388
  comFA Lactococcus lactis subsp. cremoris KW2

37.394

100

0.374

Multiple sequence alignment