Detailed information NTG1100903

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACM1ZW_RS04365
• Genome accession: NZ_CP182230
• Coordinates: 949845..950717 (+)
• Length: 290 a.a.
• NCBI ID: WP_416740215.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NFX71
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 944845..955717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM1ZW_RS04340 (ACM1ZW_04340)	-	945092..945388 (+)	297	WP_416740214.1	DUF2845 domain-containing protein	-
ACM1ZW_RS04345 (ACM1ZW_04345)	-	945625..945981 (-)	357	WP_017340815.1	BON domain-containing protein	-
ACM1ZW_RS04350 (ACM1ZW_04350)	-	946287..946697 (-)	411	WP_017340816.1	pilin	-
ACM1ZW_RS04355 (ACM1ZW_04355)	pilB	946923..948623 (+)	1701	WP_017340817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACM1ZW_RS04360 (ACM1ZW_04360)	pilC	948626..949843 (+)	1218	WP_017340818.1	type II secretion system F family protein	Machinery gene
ACM1ZW_RS04365 (ACM1ZW_04365)	pilD	949845..950717 (+)	873	WP_416740215.1	prepilin peptidase	Machinery gene
ACM1ZW_RS04370 (ACM1ZW_04370)	coaE	950714..951337 (+)	624	WP_017340820.1	dephospho-CoA kinase	-
ACM1ZW_RS04375 (ACM1ZW_04375)	yacG	951334..951534 (+)	201	WP_017340821.1	DNA gyrase inhibitor YacG	-
ACM1ZW_RS04380 (ACM1ZW_04380)	-	951544..951759 (-)	216	WP_414878306.1	hypothetical protein	-
ACM1ZW_RS04385 (ACM1ZW_04385)	-	951823..952512 (-)	690	WP_017340823.1	energy-coupling factor ABC transporter permease	-
ACM1ZW_RS04390 (ACM1ZW_04390)	-	952700..952942 (+)	243	WP_414884100.1	DUF2790 domain-containing protein	-
ACM1ZW_RS04395 (ACM1ZW_04395)	-	952961..953608 (-)	648	WP_416740216.1	methyl-accepting chemotaxis protein	-
ACM1ZW_RS04400 (ACM1ZW_04400)	-	953605..954873 (-)	1269	WP_017340826.1	OprD family porin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32017.42 Da
• Isoelectric Point: 8.0477

>NTDB_id=1100903 ACM1ZW_RS04365 WP_416740215.1 949845..950717(+) (pilD) [Pseudomonas sp. NFX71]
MPLNEILTLYPLAFVGIALIVGLLVGSFLNVVIWRLPKMLAREWRLQAYEILGLPGETPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYVFLRGRCASCATPISKRYPLTELACGLLSAFIAWHFGFGGQAVMVLVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFELFVPLTEALWGAIAGYMALWSVFWLFKLITGKDGIGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVIGVILLSLRNAKASTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1100903 ACM1ZW_RS04365 WP_416740215.1 949845..950717(+) (pilD) [Pseudomonas sp. NFX71]
ATGCCCCTGAACGAAATCCTGACCCTGTACCCGCTGGCGTTTGTCGGCATTGCACTGATAGTCGGCTTGCTGGTCGGCAG
CTTCCTCAACGTAGTGATCTGGCGCCTGCCGAAAATGCTCGCGCGCGAATGGCGACTGCAGGCCTATGAAATTCTCGGCT
TGCCTGGCGAAACACCGCTCCCGACCTACAACCTGATGCTGCCCCATTCCCAATGCCCGCACTGTGGGCACCGGATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGTTATGTGTTTTTACGTGGGCGATGCGCCAGCTGCGCAACCCCCATCAGCAAACG
CTATCCATTGACCGAACTGGCGTGCGGCCTGCTGTCAGCGTTCATCGCCTGGCATTTCGGTTTCGGTGGGCAGGCCGTGA
TGGTGCTGGTGTTGACCTGGGGTTTGTTGGCCATGAGCCTGATCGACGCCGAGCATCAGTTGTTGCCGGATGTACTGGTG
CTGCCGCTGCTGTGGCTGGGATTGATCGTCAACAGCTTCGAGTTGTTCGTGCCATTGACCGAGGCACTGTGGGGCGCAAT
TGCTGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGATGGCATCGGCCACGGCGATT
TCAAGCTCCTGGCCATGCTGGGCGCCTGGGGTGGCTGGCAGATTTTGCCGCTCACCATTCTGCTGTCGTCTCTGGTCGGT
GCCGTTATCGGCGTTATTTTGCTGAGCCTGCGCAACGCTAAAGCCTCGACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGCTGGATTGCGTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.128	97.241	0.507
pilD	Vibrio campbellii strain DS40M4	50.709	97.241	0.493
pilD	Acinetobacter baumannii D1279779	50	93.793	0.469
pilD	Acinetobacter nosocomialis M2	50	93.793	0.469
pilD	Neisseria gonorrhoeae MS11	49.63	93.103	0.462