Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACM66N_RS07440 Genome accession   NZ_CP182111
Coordinates   1570327..1571664 (+) Length   445 a.a.
NCBI ID   WP_416638441.1    Uniprot ID   -
Organism   Pseudomonas sp. OHS18     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565327..1576664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM66N_RS07415 (ACM66N_07415) pgeF 1565494..1566234 (-) 741 WP_416638440.1 peptidoglycan editing factor PgeF -
  ACM66N_RS07420 (ACM66N_07420) rluD 1566231..1567206 (-) 976 Protein_1443 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACM66N_RS07425 (ACM66N_07425) - 1567354..1568346 (+) 993 WP_111461032.1 outer membrane protein assembly factor BamD -
  ACM66N_RS07430 (ACM66N_07430) - 1568492..1568737 (+) 246 WP_111461033.1 PP0621 family protein -
  ACM66N_RS07435 (ACM66N_07435) - 1568727..1570318 (+) 1592 Protein_1446 sensor histidine kinase -
  ACM66N_RS07440 (ACM66N_07440) pilR 1570327..1571664 (+) 1338 WP_416638441.1 sigma-54-dependent transcriptional regulator Regulator
  ACM66N_RS07445 (ACM66N_07445) - 1571743..1572782 (-) 1040 Protein_1448 NAD(P)/FAD-dependent oxidoreductase -
  ACM66N_RS07450 (ACM66N_07450) - 1572783..1572851 (-) 69 Protein_1449 hypothetical protein -
  ACM66N_RS07455 (ACM66N_07455) - 1572947..1573438 (+) 492 WP_111461483.1 GspH/FimT family pseudopilin -
  ACM66N_RS07460 (ACM66N_07460) - 1573613..1574059 (+) 447 WP_158534792.1 GspH/FimT family pseudopilin -
  ACM66N_RS07465 (ACM66N_07465) pilV 1574075..1574641 (+) 567 WP_111461037.1 type IV pilus modification protein PilV -
  ACM66N_RS07470 (ACM66N_07470) - 1574638..1575486 (+) 849 WP_111461038.1 PilW family protein -
  ACM66N_RS07475 (ACM66N_07475) - 1575483..1575980 (+) 498 WP_416638443.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49547.91 Da        Isoelectric Point: 6.2859

>NTDB_id=1100408 ACM66N_RS07440 WP_416638441.1 1570327..1571664(+) (pilR) [Pseudomonas sp. OHS18]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGSGLDIVQHIQQRHPQTPVAM
ITAFGSVDTAINALKAGAFDFLTKPVDLGRLRELVSTALRLHASEEGEAPGSSRLLGESPPMRALRGQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRRERAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGSLFLDEVADLP
LTMQVKLLRAIQEKAIRAVGGQQEVVVDTRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADVM
LKRLNEGIGLPPVKLDGPALEKLKSYRFPGNVRELENMLERAYTLCEGDVICANDLRLADAAPASENGEASLAQIDNIED
YLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1100408 ACM66N_RS07440 WP_416638441.1 1570327..1571664(+) (pilR) [Pseudomonas sp. OHS18]
ATGAATCGCCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAACTGCTGGAGATCACCCTCGGGCGCATGAA
ACTCGACACCCGCAGCGCCCGTAACGTCAAGGAAGCGCGCGAGTGGCTGGCCAAGGAGCCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCAGCGGCCTGGATATCGTGCAGCACATCCAGCAGCGCCATCCGCAGACGCCGGTGGCGATG
ATCACCGCGTTCGGCAGCGTCGACACGGCGATCAACGCCCTCAAGGCGGGCGCTTTCGATTTCCTGACCAAGCCGGTCGA
CCTGGGCCGCCTGCGCGAACTGGTCAGCACCGCCCTGCGCCTGCACGCCAGCGAAGAAGGCGAAGCGCCGGGCAGCAGCC
GCCTGCTGGGCGAGTCGCCACCGATGCGTGCCTTGCGCGGGCAGATCCAGAAACTCGCGCGCAGCCAGGCGCCGGTGTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGCCTTATCCACGAACAGGGCCCGCGCCGCGAACGCGCCTT
CGTACCGGTCAACTGCGGCGCGATTCCCTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCG
GCGCCGTCGAGGACAAACAGGGCCTGTTCCAGGCCGCCAATGGCGGCAGCCTGTTCCTCGATGAAGTGGCCGACCTGCCG
CTGACCATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAAAAGGCCATCCGCGCCGTCGGTGGCCAGCAGGAAGTCGTGGT
CGACACCCGCATCCTGTGCGCCACCCACAAGGACCTTGCCGCCGAAGTGGCAGCCGGGCGCTTCCGCCAGGATCTCTACT
ACCGCCTCAACGTGATTGAACTGCGCGTACCACCGCTGCGCGAGCGCCGCGAGGACATTCCCCTGCTGGCCGACGTGATG
CTCAAGCGCCTCAACGAAGGCATCGGCCTGCCACCGGTCAAGCTCGACGGCCCCGCCCTGGAAAAGCTCAAGAGCTACCG
TTTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGGCGACGTGATCTGCGCCA
ACGACCTGCGCCTGGCAGACGCCGCACCTGCCAGCGAAAACGGCGAGGCGAGCCTGGCGCAGATCGACAACATCGAGGAC
TACCTCGAAGACGTCGAGCGCAAACTGATCATGCAGGCTCTGGAAGAAACCCGCTGGAACCGCACCGCCGCTGCGCAGCG
CCTGGGGCTTAGCTTCCGCTCGATGCGCTATCGCCTGAAGAAACTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.517

100

0.865
  pilR Acinetobacter baumannii strain A118

50.109

100

0.517
  luxO Vibrio cholerae strain A1552

36.771

100

0.369

Multiple sequence alignment