Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABXS94_RS08620 Genome accession   NZ_AP031566
Coordinates   1813874..1814578 (+) Length   234 a.a.
NCBI ID   WP_353675016.1    Uniprot ID   -
Organism   Acinetobacter towneri strain PT23-B2     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808874..1819578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS94_RS08605 (PT23B2_16690) - 1808901..1810184 (-) 1284 WP_225530900.1 DUF945 family protein -
  ABXS94_RS08610 (PT23B2_16700) clpB 1810413..1812992 (-) 2580 WP_353675014.1 ATP-dependent chaperone ClpB -
  ABXS94_RS08615 (PT23B2_16710) - 1813303..1813725 (-) 423 WP_353675015.1 OsmC family protein -
  ABXS94_RS08620 (PT23B2_16720) crp 1813874..1814578 (+) 705 WP_353675016.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABXS94_RS08625 (PT23B2_16730) - 1814783..1815832 (+) 1050 WP_353675017.1 NADP(H)-dependent aldo-keto reductase -
  ABXS94_RS08630 (PT23B2_16740) - 1816001..1816783 (-) 783 WP_004971571.1 M48 family metallopeptidase -
  ABXS94_RS08635 (PT23B2_16750) - 1816940..1817248 (-) 309 WP_353675018.1 hypothetical protein -
  ABXS94_RS08640 (PT23B2_16760) - 1817487..1818806 (-) 1320 WP_004971574.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26288.86 Da        Isoelectric Point: 4.6470

>NTDB_id=110008 ABXS94_RS08620 WP_353675016.1 1813874..1814578(+) (crp) [Acinetobacter towneri strain PT23-B2]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKALEEQGMIETDGKAILIFDASLEQNEATDGDFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=110008 ABXS94_RS08620 WP_353675016.1 1813874..1814578(+) (crp) [Acinetobacter towneri strain PT23-B2]
ATGACTTCAAACTTTTCACAGCTGAGCACTGATGCATTGTCCCCTGGACAACTGCCTGACTCAGTCAAAGCATTATTAAA
ACGTGCATACATCAACCGTTATCCAAAACGGACAACTATTGTTGATGCGGGGACTGAATCTAAATCGTTATATTTGATTT
TAAAAGGTTCAGTATCAATTATTCTTCGCGAAGATGATGATCGCGAAATTGTTGTGGCATATTTGAATCCAGGCGACTTT
TTTGGGGAAATGGGTCTGTTTGAATCGAATCCACAACGTACTGCAGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTACTTATGAAAACTTCCACGAACTCAGCAAACAATATCCTGACTTAAGCTATGCCGTTTTTGCACAGCTGGTACGTC
GTTTAAAAAATACTACACGTAAGGTAACTGACCTTGCCTTTATAGATGTGTCTGGTCGTATTGCACGTTGTTTGATTGAC
CTTTCTGCACAGCCAGAAGCTATGATTTTACCAAATGGTCGTCAGATTCGTATTACACGTCAGGAAATTGGCCGTATTGT
TGGTTGTTCACGTGAAATGGTTGGTCGTGTACTGAAAGCGCTTGAAGAGCAAGGCATGATTGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCTTCTTTGGAGCAAAATGAAGCCACTGATGGCGACTTTGATGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.88

100

0.919
  crp Vibrio cholerae strain A1552

47.087

88.034

0.415
  crp Haemophilus influenzae Rd KW20

47.692

83.333

0.397

Multiple sequence alignment