Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACM530_RS22445 Genome accession   NZ_CP181333
Coordinates   4800373..4802598 (+) Length   741 a.a.
NCBI ID   WP_416363186.1    Uniprot ID   -
Organism   Pseudomonas sp. NFX183     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4795373..4807598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM530_RS22430 (ACM530_22430) - 4797648..4798373 (+) 726 WP_416363185.1 response regulator transcription factor -
  ACM530_RS22435 (ACM530_22435) - 4798360..4799718 (+) 1359 WP_369303059.1 histidine kinase sensor domain-containing protein -
  ACM530_RS22440 (ACM530_22440) - 4799722..4800237 (-) 516 WP_145164745.1 DUF2062 domain-containing protein -
  ACM530_RS22445 (ACM530_22445) comA 4800373..4802598 (+) 2226 WP_416363186.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACM530_RS22450 (ACM530_22450) exbB 4802708..4803343 (+) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACM530_RS22455 (ACM530_22455) - 4803340..4803768 (+) 429 WP_416363187.1 ExbD/TolR family protein -
  ACM530_RS22460 (ACM530_22460) lpxK 4803768..4804778 (+) 1011 WP_416363188.1 tetraacyldisaccharide 4'-kinase -
  ACM530_RS22465 (ACM530_22465) - 4804803..4804988 (+) 186 WP_003174668.1 Trm112 family protein -
  ACM530_RS22470 (ACM530_22470) kdsB 4804985..4805749 (+) 765 WP_416363189.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACM530_RS22475 (ACM530_22475) - 4805749..4806213 (+) 465 WP_242199496.1 low molecular weight protein-tyrosine-phosphatase -
  ACM530_RS22480 (ACM530_22480) murB 4806210..4807229 (+) 1020 WP_416363190.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80132.96 Da        Isoelectric Point: 10.3891

>NTDB_id=1099791 ACM530_RS22445 WP_416363186.1 4800373..4802598(+) (comA) [Pseudomonas sp. NFX183]
MKIGMFALGLGLLSLRLLPALPSTGWLLAMWVIALMLLPFRTYPVAFFLFGLGWACLSAQWALDDRLKPALDGQTRWVEG
RVTGLPQQTSTGVRFELTDSRSRTARLPKRIRVSWHGGPPVKSGERWRLAITLKRPAGLLNFHGFDHEAWLLAQRIGATG
SVKDGQRLAPARNAWRDAVRQRLAAVDAQGREAGLAALVLGDGSGLAAGDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARHGCWPRALPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALDAVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWSLWHAWTRPQWLIAIGLFPLLLVLGLPVSLSAPVANLFAVPWISLVVLPLAL
LGTALLAIPFVGESLLWLAGGALDGLFRGLTLLASQQPAWIPAEVPLVYWCVSLVGAVLLLLPQGVPFRLLGWPMLLLAV
FPPRQAVPFGQVEVVQLDVGQGQALILRTRHHTLLYDAGPRSGEFDLGARVVLPALKKLGVDTLDLLVISHAHADHAGGA
PAVAQGLAVQRVIGGETQGLPALLDTQPCVSGEQWEWDGVAFELWQWPGATSSNPKSCVLGVKANGERLLLTGDIDRAAE
RAFLASPLAVRTDWLQAPHHGSRSSSSWPLLEQLVPKSVLISRGRGNAFGHPHPQVLARYQALGSRVYDSAEQGAVRVQL
GAFEPPEVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1099791 ACM530_RS22445 WP_416363186.1 4800373..4802598(+) (comA) [Pseudomonas sp. NFX183]
ATGAAAATCGGCATGTTTGCGCTCGGACTTGGCCTGCTTTCGTTGCGACTTTTACCCGCACTGCCGTCTACCGGATGGCT
ACTGGCCATGTGGGTGATTGCGTTGATGTTGTTGCCTTTTCGCACCTACCCGGTGGCCTTTTTCCTGTTCGGATTGGGCT
GGGCGTGTCTGAGCGCGCAGTGGGCCTTGGACGACCGTCTGAAGCCGGCGCTGGATGGTCAGACGCGTTGGGTAGAAGGC
CGCGTGACCGGGCTGCCGCAGCAGACAAGCACTGGCGTACGGTTTGAACTGACCGACAGCCGGTCACGCACAGCCCGCTT
ACCCAAGCGCATTCGGGTGTCCTGGCACGGTGGCCCGCCAGTAAAGAGTGGTGAGCGTTGGCGCCTGGCGATCACCTTGA
AGCGGCCCGCGGGGCTGCTCAATTTTCACGGTTTTGACCACGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGA
TCGGTCAAGGACGGCCAGCGCCTGGCGCCAGCCCGCAATGCCTGGCGCGATGCTGTCCGGCAGCGCTTGGCGGCGGTGGA
CGCCCAAGGGCGCGAGGCGGGTTTGGCGGCGCTGGTATTGGGCGATGGCTCCGGGCTGGCTGCCGGGGACTGGCAGGTAT
TGCAGGACACCGGAACCGTGCACCTGCTGGTGATCTCCGGCCAGCACATCGGCTTATTGGCGGGGTTGATCTACGGCCTG
GTGGCCGGGCTTGCGCGCCACGGCTGTTGGCCGCGAGCCTTGCCGTGGCTGCCATGGGCGTGTGGCCTGGCGTTTGCCGC
CGCGCTGGGTTACGGCCTGTTGGCTGGGTTTGGTGTGCCGGTACAACGCGCCTGTGTGATGGTCGGCCTGGTATTGCTGT
GGCGTCTGCGTTTCCGGCATTTGGGGATCTGGTGGCCACTGTTGTTGGCGCTCGACGCCGTGCTGGTGCTGGAACCGTTG
GCGAGTTTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCCGTCGCGGTGCTGGTACTGGCGTTCAGCGGGCGCCTGGGCCC
ATGGAGTCTGTGGCACGCATGGACGCGTCCACAGTGGTTGATTGCCATCGGTTTGTTTCCGCTCCTGCTGGTGCTTGGCT
TGCCTGTAAGCCTGAGTGCGCCAGTGGCCAATCTGTTTGCCGTGCCATGGATCAGCCTGGTGGTATTGCCATTGGCCCTG
CTGGGGACTGCGCTGCTGGCGATTCCGTTTGTGGGTGAAAGCTTGCTGTGGTTGGCCGGCGGCGCACTTGATGGGCTTTT
CAGGGGGCTGACGCTGCTGGCGAGCCAGCAGCCAGCCTGGATACCGGCCGAGGTGCCCCTGGTGTATTGGTGTGTAAGCC
TGGTGGGCGCGGTGTTGTTGCTGCTGCCCCAAGGCGTGCCGTTTCGGCTGCTGGGCTGGCCAATGCTGTTGCTGGCGGTC
TTTCCACCCAGGCAGGCCGTGCCTTTTGGGCAGGTTGAAGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCGCTGATCCT
GCGCACGCGTCATCACACCTTGCTTTACGATGCGGGGCCGCGTTCCGGCGAGTTTGATCTTGGCGCGCGCGTGGTGCTGC
CCGCGTTGAAAAAACTCGGGGTCGACACCCTGGACCTGCTGGTGATCAGCCATGCTCACGCGGATCACGCGGGCGGTGCG
CCAGCCGTTGCCCAGGGGCTTGCAGTCCAGCGGGTGATCGGAGGAGAAACCCAAGGCTTGCCGGCATTGCTCGATACTCA
ACCCTGCGTCAGTGGCGAGCAGTGGGAGTGGGACGGTGTAGCGTTTGAACTGTGGCAGTGGCCTGGCGCCACTAGCAGCA
ACCCGAAATCCTGTGTGTTGGGTGTAAAGGCCAACGGCGAACGCCTGCTGTTGACCGGCGATATCGACCGCGCTGCCGAA
CGGGCTTTCCTCGCGTCCCCCCTGGCGGTACGGACCGATTGGCTGCAGGCGCCGCATCATGGCAGTCGCAGTTCTTCATC
CTGGCCCTTACTGGAACAGCTGGTGCCCAAATCGGTCCTGATCTCACGGGGGCGTGGCAACGCGTTCGGTCATCCGCACC
CGCAGGTGCTGGCGCGTTATCAGGCGTTGGGCAGTCGCGTGTACGACAGCGCCGAGCAAGGCGCCGTGCGTGTGCAATTG
GGCGCCTTTGAACCACCTGAAGTTGCTCGCAGTCAACGCCGCTTCTGGCGTGAAGCGTTACCCTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-651)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.031

0.58
  comA Ralstonia pseudosolanacearum GMI1000

36.492

100

0.385

Multiple sequence alignment