Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACM530_RS22450 Genome accession   NZ_CP181333
Coordinates   4802708..4803343 (+) Length   211 a.a.
NCBI ID   WP_106579832.1    Uniprot ID   A0A7M1KNP4
Organism   Pseudomonas sp. NFX183     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4797708..4808343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM530_RS22435 (ACM530_22435) - 4798360..4799718 (+) 1359 WP_369303059.1 histidine kinase sensor domain-containing protein -
  ACM530_RS22440 (ACM530_22440) - 4799722..4800237 (-) 516 WP_145164745.1 DUF2062 domain-containing protein -
  ACM530_RS22445 (ACM530_22445) comA 4800373..4802598 (+) 2226 WP_416363186.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACM530_RS22450 (ACM530_22450) exbB 4802708..4803343 (+) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACM530_RS22455 (ACM530_22455) - 4803340..4803768 (+) 429 WP_416363187.1 ExbD/TolR family protein -
  ACM530_RS22460 (ACM530_22460) lpxK 4803768..4804778 (+) 1011 WP_416363188.1 tetraacyldisaccharide 4'-kinase -
  ACM530_RS22465 (ACM530_22465) - 4804803..4804988 (+) 186 WP_003174668.1 Trm112 family protein -
  ACM530_RS22470 (ACM530_22470) kdsB 4804985..4805749 (+) 765 WP_416363189.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACM530_RS22475 (ACM530_22475) - 4805749..4806213 (+) 465 WP_242199496.1 low molecular weight protein-tyrosine-phosphatase -
  ACM530_RS22480 (ACM530_22480) murB 4806210..4807229 (+) 1020 WP_416363190.1 UDP-N-acetylmuramate dehydrogenase -
  ACM530_RS22485 (ACM530_22485) - 4807292..4807963 (-) 672 WP_416363191.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23021.17 Da        Isoelectric Point: 6.8768

>NTDB_id=1099792 ACM530_RS22450 WP_106579832.1 4802708..4803343(+) (exbB) [Pseudomonas sp. NFX183]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1099792 ACM530_RS22450 WP_106579832.1 4802708..4803343(+) (exbB) [Pseudomonas sp. NFX183]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGCATCACGCCCGAGCATTTGCTGGGGCAGGTGTGGGGCTGGATCAAAAACA
AACAACTGGATAAAGACAAACTCAAGGAATTGCGCGCCAACTCCCCCCTGGGTGAAATCCTGGCTGCCGGTCTTGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATTGAGGAAGCCGCCGCGCGGGTCATCCATGAGATGGAGCGCTATAT
CAATGCGCTGGGCACCATCGCGGCCATGGCGCCATTGCTCGGCCTGTTGGGTACGGTGTTGGGCATGATTGATATTTTCA
GCTCATTCATGGGCTCAGGCATGACCACTAATGCCGCGGTATTGGCAGGCGGTATCTCCAAGGCCCTGATTACTACGGCT
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTTTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTCGTGGTAGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGATCGTGATGTCGATTTCGTCGAGGGCCGGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KNP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.526

0.834

Multiple sequence alignment