Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   ACLQ7P_RS19905 Genome accession   NZ_CP181322
Coordinates   3730602..3731759 (-) Length   385 a.a.
NCBI ID   WP_041339513.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3725602..3736759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS19875 (ACLQ7P_19875) yvyF 3725869..3726288 (-) 420 WP_326043244.1 TIGR03826 family flagellar region protein -
  ACLQ7P_RS19880 (ACLQ7P_19880) comFC 3726362..3727084 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  ACLQ7P_RS19885 (ACLQ7P_19885) comFB 3727048..3727330 (-) 283 Protein_3859 late competence development ComFB family protein -
  ACLQ7P_RS19890 (ACLQ7P_19890) comFA 3727390..3728781 (-) 1392 WP_121591202.1 ATP-dependent helicase ComFA Machinery gene
  ACLQ7P_RS19895 (ACLQ7P_19895) fakBA 3728887..3729732 (-) 846 WP_121591203.1 DegV family protein -
  ACLQ7P_RS19900 (ACLQ7P_19900) degU 3729830..3730519 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACLQ7P_RS19905 (ACLQ7P_19905) degS 3730602..3731759 (-) 1158 WP_041339513.1 two-component sensor histidine kinase DegS Regulator
  ACLQ7P_RS19910 (ACLQ7P_19910) yvyE 3731976..3732629 (+) 654 WP_121591204.1 YigZ family protein -
  ACLQ7P_RS19915 (ACLQ7P_19915) tagV 3732629..3733804 (+) 1176 WP_041055022.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ACLQ7P_RS19920 (ACLQ7P_19920) tagO 3733877..3734953 (-) 1077 WP_043858787.1 MraY family glycosyltransferase -
  ACLQ7P_RS19925 (ACLQ7P_19925) tuaH 3735098..3736291 (-) 1194 WP_121591977.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44966.77 Da        Isoelectric Point: 6.4231

>NTDB_id=1099734 ACLQ7P_RS19905 WP_041339513.1 3730602..3731759(-) (degS) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPHFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=1099734 ACLQ7P_RS19905 WP_041339513.1 3730602..3731759(-) (degS) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAACAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAGCGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTACTCAACTACTTGAATCAGGACTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGAG
GGGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCATTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

99.74

100

0.997

Multiple sequence alignment