Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACLQ7P_RS19900 Genome accession   NZ_CP181322
Coordinates   3729830..3730519 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3724830..3735519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS19865 (ACLQ7P_19865) flgN 3725024..3725506 (-) 483 WP_416247191.1 flagellar protein FlgN -
  ACLQ7P_RS19870 (ACLQ7P_19870) flgM 3725522..3725788 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACLQ7P_RS19875 (ACLQ7P_19875) yvyF 3725869..3726288 (-) 420 WP_326043244.1 TIGR03826 family flagellar region protein -
  ACLQ7P_RS19880 (ACLQ7P_19880) comFC 3726362..3727084 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  ACLQ7P_RS19885 (ACLQ7P_19885) comFB 3727048..3727330 (-) 283 Protein_3859 late competence development ComFB family protein -
  ACLQ7P_RS19890 (ACLQ7P_19890) comFA 3727390..3728781 (-) 1392 WP_121591202.1 ATP-dependent helicase ComFA Machinery gene
  ACLQ7P_RS19895 (ACLQ7P_19895) fakBA 3728887..3729732 (-) 846 WP_121591203.1 DegV family protein -
  ACLQ7P_RS19900 (ACLQ7P_19900) degU 3729830..3730519 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACLQ7P_RS19905 (ACLQ7P_19905) degS 3730602..3731759 (-) 1158 WP_041339513.1 two-component sensor histidine kinase DegS Regulator
  ACLQ7P_RS19910 (ACLQ7P_19910) yvyE 3731976..3732629 (+) 654 WP_121591204.1 YigZ family protein -
  ACLQ7P_RS19915 (ACLQ7P_19915) tagV 3732629..3733804 (+) 1176 WP_041055022.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ACLQ7P_RS19920 (ACLQ7P_19920) tagO 3733877..3734953 (-) 1077 WP_043858787.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1099733 ACLQ7P_RS19900 WP_003219701.1 3729830..3730519(-) (degU) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1099733 ACLQ7P_RS19900 WP_003219701.1 3729830..3730519(-) (degU) [Bacillus subtilis subsp. subtilis strain JCK-1398]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment