Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACLQ7P_RS19890 Genome accession   NZ_CP181322
Coordinates   3727390..3728781 (-) Length   463 a.a.
NCBI ID   WP_121591202.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3722390..3733781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS19855 (ACLQ7P_19855) flgL 3722575..3723471 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ACLQ7P_RS19860 (ACLQ7P_19860) flgK 3723482..3725005 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ACLQ7P_RS19865 (ACLQ7P_19865) flgN 3725024..3725506 (-) 483 WP_416247191.1 flagellar protein FlgN -
  ACLQ7P_RS19870 (ACLQ7P_19870) flgM 3725522..3725788 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACLQ7P_RS19875 (ACLQ7P_19875) yvyF 3725869..3726288 (-) 420 WP_326043244.1 TIGR03826 family flagellar region protein -
  ACLQ7P_RS19880 (ACLQ7P_19880) comFC 3726362..3727084 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  ACLQ7P_RS19885 (ACLQ7P_19885) comFB 3727048..3727330 (-) 283 Protein_3859 late competence development ComFB family protein -
  ACLQ7P_RS19890 (ACLQ7P_19890) comFA 3727390..3728781 (-) 1392 WP_121591202.1 ATP-dependent helicase ComFA Machinery gene
  ACLQ7P_RS19895 (ACLQ7P_19895) fakBA 3728887..3729732 (-) 846 WP_121591203.1 DegV family protein -
  ACLQ7P_RS19900 (ACLQ7P_19900) degU 3729830..3730519 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACLQ7P_RS19905 (ACLQ7P_19905) degS 3730602..3731759 (-) 1158 WP_041339513.1 two-component sensor histidine kinase DegS Regulator
  ACLQ7P_RS19910 (ACLQ7P_19910) yvyE 3731976..3732629 (+) 654 WP_121591204.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52518.57 Da        Isoelectric Point: 9.8019

>NTDB_id=1099732 ACLQ7P_RS19890 WP_121591202.1 3727390..3728781(-) (comFA) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MNVPVEKNISFSKELRQTLRSRHLLRTELPFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENEPNWQSIKLTWDGKLSNGQQKAANVLIEAISKKEELLIWAVCGAGKTEILFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGSPVFLFVPSVSIMEKAAACFKGVDCRAESVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1099732 ACLQ7P_RS19890 WP_121591202.1 3727390..3728781(-) (comFA) [Bacillus subtilis subsp. subtilis strain JCK-1398]
GTGAATGTGCCAGTTGAAAAAAACATTTCCTTTTCAAAAGAATTGCGGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCTATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAACGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATTCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGCCTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAAGGTGCTGACATTTCAGCGCTTTATGGAGGAAGTGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCATTCGATGTAATGATCGTTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGGAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGTCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATAATGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTGATTGCCGAGCCGAATCTGTGCACGCAGAAGACAAGCATAGGAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCATTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

96.328

100

0.963

Multiple sequence alignment