Detailed information NTG0109965

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACGHAD_RS13475
• Genome accession: NZ_AP031500
• Coordinates: 3183107..3184489 (+)
• Length: 460 a.a.
• NCBI ID: WP_382418162.1
• Uniprot ID: -
• Organism: Gilvimarinus japonicus strain 12-2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3178107..3189489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGHAD_RS13460 (R50076_26860)	-	3178604..3179506 (+)	903	WP_382418168.1	outer membrane protein assembly factor BamD	-
ACGHAD_RS13465 (R50076_26870)	-	3179590..3181218 (-)	1629	WP_382418166.1	NAD+ synthase	-
ACGHAD_RS13470 (R50076_26880)	-	3181506..3183110 (+)	1605	WP_382418164.1	sensor histidine kinase	-
ACGHAD_RS13475 (R50076_26890)	pilR	3183107..3184489 (+)	1383	WP_382418162.1	sigma-54-dependent transcriptional regulator	Regulator
ACGHAD_RS13480 (R50076_26900)	-	3184512..3184805 (-)	294	WP_382418607.1	type IV pilin protein	-
ACGHAD_RS13485	-	3184805..3184901 (-)	97	Protein_2642	type IV pilin protein	-
ACGHAD_RS13490 (R50076_26910)	-	3184914..3189182 (-)	4269	WP_382418160.1	pilus assembly protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 50413.56 Da
• Isoelectric Point: 5.5010

>NTDB_id=109965 ACGHAD_RS13475 WP_382418162.1 3183107..3184489(+) (pilR) [Gilvimarinus japonicus strain 12-2]
MSEKTALVIDDEPDIRELLEITLGRMQIDTRSVATIRDAKALLAKQTFSFCLTDMKLPDGNGLEIVEHIQQHQPRMPVAV
ITAHGNVDIAIESMKAGAFDFISKPVDLTTLRKLVNTAIQSGDLPNEPSNKTTLLTGESSSIVRLSASIHKLARSQAPVY
ISGESGSGKELVAHSIHNLGPRADAPFIAVNCGAIPRELLESELFGHVKGSFTGAHQDKPGLFKAAEGGTLFFDEVADLP
LDMQVKLLRAIQEKTVRPVGAAGEIATDVRILCATHKSLEQEVARGTFRQDLFYRLNVIQLAVPALRERQEDIPILAERL
LNKIARSVGHEPPALSSKALTALMAYSFPGNVRELENILERAFTLCEGDCIDESDLQLPTAASTIATDDAPTKAGNNAKP
DHFQRCLEHESLDEYLEEIEKEVLCSALEANRWNKTQAAKKLGVSFRSLRYRLQKLGLDD

Nucleotide

• Length: 1383 bp

>NTDB_id=109965 ACGHAD_RS13475 WP_382418162.1 3183107..3184489(+) (pilR) [Gilvimarinus japonicus strain 12-2]
ATGAGCGAGAAAACCGCATTAGTCATCGATGACGAACCCGACATTCGCGAACTGTTAGAGATTACACTGGGGCGAATGCA
AATCGACACACGCAGCGTCGCGACTATTCGCGACGCCAAGGCACTGCTCGCCAAACAAACATTTTCTTTTTGCTTAACCG
ACATGAAGCTACCAGACGGCAACGGCTTAGAGATTGTCGAACATATTCAGCAGCATCAGCCGCGCATGCCGGTAGCCGTT
ATAACCGCTCACGGCAACGTCGACATTGCGATTGAATCGATGAAAGCCGGCGCGTTTGACTTCATCTCTAAACCCGTCGA
CCTAACAACGCTACGCAAACTTGTTAATACTGCCATCCAATCGGGCGACCTACCCAACGAACCGTCCAACAAAACGACCC
TACTGACCGGCGAGTCGTCATCCATTGTTCGCCTAAGTGCCAGCATACATAAGCTTGCGCGCTCACAGGCGCCGGTTTAT
ATCAGCGGCGAATCAGGCTCGGGCAAAGAACTGGTTGCGCACTCCATTCACAACCTGGGTCCGCGGGCAGACGCGCCTTT
TATCGCAGTAAACTGCGGTGCCATTCCGCGTGAGTTGCTTGAAAGCGAATTATTTGGCCACGTCAAAGGCAGCTTTACCG
GCGCCCACCAAGACAAACCCGGCCTATTTAAAGCGGCAGAAGGTGGCACATTATTTTTTGATGAAGTCGCCGACTTGCCA
TTGGATATGCAAGTGAAGCTGCTGCGTGCTATTCAAGAAAAAACCGTGCGTCCCGTCGGCGCGGCAGGAGAAATAGCCAC
CGATGTGCGGATTCTCTGCGCCACCCATAAAAGCCTCGAACAAGAAGTCGCTCGAGGCACCTTTCGCCAAGATTTATTCT
ACCGGCTCAATGTTATTCAGCTGGCCGTTCCCGCCTTGCGCGAGCGCCAAGAAGATATCCCCATACTGGCCGAGCGATTA
CTCAACAAAATAGCGCGCTCGGTAGGGCATGAGCCACCCGCGTTATCAAGCAAGGCGTTAACGGCTCTTATGGCTTACTC
ATTTCCAGGCAATGTTCGTGAGCTAGAGAATATTTTAGAACGCGCATTTACCTTGTGCGAAGGCGATTGTATTGACGAGT
CTGACTTACAATTGCCAACCGCAGCCTCTACCATCGCCACCGACGATGCCCCCACAAAAGCTGGCAACAACGCAAAACCC
GACCACTTTCAACGGTGTTTAGAGCATGAATCTCTGGATGAGTATCTAGAAGAGATTGAAAAAGAAGTACTGTGCAGCGC
ACTGGAGGCTAATCGCTGGAATAAGACTCAAGCGGCAAAAAAACTAGGCGTGAGCTTTAGGTCGTTACGGTATCGGCTGC
AAAAGTTGGGGCTGGATGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Bacterial regulatory protein, Fis family (HTH_8) (416-456)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.477	99.783	0.593
pilR	Acinetobacter baumannii strain A118	49.053	100	0.507
luxO	Vibrio cholerae strain A1552	38.274	98.261	0.376