Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACM67B_RS07485 Genome accession   NZ_CP181247
Coordinates   1572597..1573400 (+) Length   267 a.a.
NCBI ID   WP_416189101.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567597..1578400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS07460 (ACM67B_07460) - 1568407..1568826 (-) 420 WP_095501985.1 hypothetical protein -
  ACM67B_RS07465 (ACM67B_07465) holA 1568978..1569979 (-) 1002 WP_416189097.1 DNA polymerase III subunit delta -
  ACM67B_RS07470 (ACM67B_07470) lptE 1569980..1570459 (-) 480 WP_416189098.1 LPS assembly lipoprotein LptE -
  ACM67B_RS07475 (ACM67B_07475) pgeF 1570646..1571422 (-) 777 WP_416189099.1 peptidoglycan editing factor PgeF -
  ACM67B_RS07480 (ACM67B_07480) rluD 1571474..1572598 (-) 1125 WP_416189100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACM67B_RS07485 (ACM67B_07485) comL 1572597..1573400 (+) 804 WP_416189101.1 outer membrane protein assembly factor BamD Machinery gene
  ACM67B_RS07490 (ACM67B_07490) comE 1573533..1573820 (-) 288 WP_416190495.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31210.22 Da        Isoelectric Point: 7.9862

>NTDB_id=1099579 ACM67B_RS07485 WP_416189101.1 1572597..1573400(+) (comL) [Neisseria sp. CCUG17229]
MKKILLLVSLSLALSACANKGTIDKDAQITQDWSVEQLYAEAQDELNSNNYTRAIKLYELLESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYHAFAQLVERYPNS
KYAPDATARMTKLVDALGGNEIAVARYYMKRGAYVAAINRAQKIVQQYQNTRYVEESLAMMELAYKKLEKPQLAQDTRRI
LQQNFPESPFLTHEWRNGDMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1099579 ACM67B_RS07485 WP_416189101.1 1572597..1573400(+) (comL) [Neisseria sp. CCUG17229]
ATGAAAAAAATTCTTTTATTAGTTTCTTTAAGTTTGGCGCTCAGCGCATGTGCCAATAAAGGCACCATCGATAAAGACGC
TCAAATTACTCAGGATTGGAGTGTGGAACAGCTTTATGCTGAAGCACAGGATGAATTGAACAGCAACAATTATACGCGAG
CCATCAAGTTATATGAACTGCTGGAATCACGTTTCCCTAATGGCCGCTACGCGCAGCAATCGCAATTGGATACGGCCTAC
GCATACTATAAAGATGACGAACCGGAAAAAGCCCTGGCCGCCATCGACCGCTTCCAGCGCCATCATCCGCAACATCCGAA
CATGGATTATGCCTTATATTTAAAAGGCTTGGTATTGTTTAATGAAGATCAGTCTTTCTTAAACAAATTGGCTTCACAAG
ACTGGTCTGACCGAGACCCTAAAGCCAACCGCGATGCATACCATGCTTTTGCTCAATTGGTAGAACGCTATCCGAACAGT
AAATATGCACCAGATGCCACCGCACGCATGACCAAATTGGTTGATGCATTGGGTGGCAATGAAATCGCCGTTGCCCGTTA
TTACATGAAACGCGGCGCATACGTTGCGGCCATTAACCGCGCACAAAAAATTGTTCAGCAATACCAAAATACACGTTATG
TTGAAGAATCTTTAGCCATGATGGAACTGGCCTACAAAAAACTGGAAAAACCGCAACTGGCTCAAGATACCCGCCGTATT
TTGCAGCAAAACTTTCCGGAAAGCCCATTCTTAACCCATGAATGGCGCAATGGTGACATGCCTTGGTGGCGTTACTGGAA
GTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

83.083

99.625

0.828
  comL Neisseria gonorrhoeae MS11

82.707

99.625

0.824

Multiple sequence alignment