Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   ACM67B_RS00885 Genome accession   NZ_CP181247
Coordinates   181937..182644 (-) Length   235 a.a.
NCBI ID   WP_416189766.1    Uniprot ID   -
Organism   Neisseria sp. CCUG17229     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 176937..187644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67B_RS00875 (ACM67B_00875) amgK 177443..178447 (+) 1005 WP_416189764.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  ACM67B_RS00880 (ACM67B_00880) - 178775..181876 (+) 3102 WP_416189765.1 efflux RND transporter permease subunit -
  ACM67B_RS00885 (ACM67B_00885) dsbA1 181937..182644 (-) 708 WP_416189766.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  ACM67B_RS00890 (ACM67B_00890) murJ 182945..184483 (+) 1539 WP_416189767.1 murein biosynthesis integral membrane protein MurJ -
  ACM67B_RS00895 (ACM67B_00895) - 184548..184847 (-) 300 WP_095501734.1 monooxygenase -
  ACM67B_RS00900 (ACM67B_00900) trpC 184913..185695 (-) 783 WP_416189768.1 indole-3-glycerol phosphate synthase TrpC -
  ACM67B_RS00905 (ACM67B_00905) - 185773..186378 (-) 606 WP_373752803.1 trimeric intracellular cation channel family protein -
  ACM67B_RS00910 (ACM67B_00910) - 186577..187566 (-) 990 WP_416189769.1 YheT family hydrolase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25434.05 Da        Isoelectric Point: 4.9336

>NTDB_id=1099558 ACM67B_RS00885 WP_416189766.1 181937..182644(-) (dsbA1) [Neisseria sp. CCUG17229]
MNLKKITLTTFTALALAACGGQAETSVPAEGTTQNTASAPAPVAPVGLVEGQNYTVLANPIPQLQAGKVEVVEFFGYFCP
HCAHLEPVLSEHAKSFQEDTYLRKEHVVWGPEVKPLARLAAAVQIAGEKAADMPIFDAIVNQKINLADVNVLKTWLPEQT
AFDGKKVLAAFESPESQARADKMEELTNTFQISSTPVVIVGGKYQVKFQDWQSGMNTVDLLVDKVREEQKAAPAQ

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1099558 ACM67B_RS00885 WP_416189766.1 181937..182644(-) (dsbA1) [Neisseria sp. CCUG17229]
ATGAACCTGAAAAAAATTACCCTCACCACATTCACGGCTCTGGCCTTGGCAGCTTGCGGCGGCCAAGCCGAAACCAGCGT
ACCTGCTGAAGGCACTACGCAAAACACCGCTTCCGCACCGGCACCGGTTGCCCCTGTCGGCTTGGTAGAAGGCCAAAACT
ACACCGTATTGGCCAATCCGATTCCGCAATTACAAGCCGGCAAAGTCGAAGTGGTCGAATTTTTCGGCTACTTCTGCCCG
CATTGCGCCCACTTGGAACCAGTCTTGAGCGAACACGCCAAATCATTCCAAGAAGATACCTACCTGCGTAAAGAACACGT
GGTTTGGGGTCCTGAAGTAAAACCTTTGGCGCGCTTGGCCGCTGCCGTGCAAATCGCCGGTGAAAAAGCCGCCGATATGC
CGATTTTCGACGCCATCGTTAATCAAAAAATCAACTTGGCCGATGTGAATGTGTTGAAAACTTGGCTGCCGGAACAAACC
GCGTTCGACGGCAAAAAAGTTTTGGCCGCATTTGAATCACCTGAAAGCCAAGCCCGCGCCGATAAAATGGAAGAGCTGAC
CAACACCTTCCAAATCAGCAGCACACCGGTGGTGATTGTCGGCGGCAAATACCAAGTGAAGTTTCAAGATTGGCAATCGG
GTATGAATACCGTTGATTTGCTGGTGGACAAAGTCCGCGAAGAACAAAAAGCCGCGCCTGCGCAATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(68-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

67.66

100

0.677
  dsbA2 Neisseria meningitidis MC58

72.77

90.638

0.66

Multiple sequence alignment