Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACM67E_RS09900 Genome accession   NZ_CP181244
Coordinates   2152532..2154706 (+) Length   724 a.a.
NCBI ID   WP_416191280.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2147532..2159706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS09880 (ACM67E_09880) pilM 2149494..2150600 (+) 1107 WP_416192774.1 type IV pilus assembly protein PilM -
  ACM67E_RS09885 (ACM67E_09885) pilN 2150602..2151213 (+) 612 WP_416191277.1 PilN domain-containing protein Machinery gene
  ACM67E_RS09890 (ACM67E_09890) - 2151214..2151891 (+) 678 WP_416191278.1 type 4a pilus biogenesis protein PilO -
  ACM67E_RS09895 (ACM67E_09895) pilP 2151911..2152513 (+) 603 WP_416191279.1 pilus assembly protein PilP Machinery gene
  ACM67E_RS09900 (ACM67E_09900) pilQ 2152532..2154706 (+) 2175 WP_416191280.1 type IV pilus secretin PilQ Machinery gene
  ACM67E_RS09905 (ACM67E_09905) - 2154829..2155344 (+) 516 WP_416191281.1 shikimate kinase -
  ACM67E_RS09910 (ACM67E_09910) aroB 2155443..2156522 (+) 1080 WP_416191282.1 3-dehydroquinate synthase -
  ACM67E_RS09915 (ACM67E_09915) - 2156938..2157780 (+) 843 WP_416191283.1 class II glutamine amidotransferase -
  ACM67E_RS09920 (ACM67E_09920) nrdR 2158013..2158477 (+) 465 WP_416191284.1 transcriptional regulator NrdR -
  ACM67E_RS09925 (ACM67E_09925) - 2158529..2159110 (+) 582 WP_416191285.1 cytochrome C -

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 78620.00 Da        Isoelectric Point: 9.5330

>NTDB_id=1099471 ACM67E_RS09900 WP_416191280.1 2152532..2154706(+) (pilQ) [Neisseria sp. CCUG12390]
MKTKRMTRLFAGLSIAMAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDITSPTGFVTSTPARIALDFANTNIQLPQPVL
EYSDPLLNQITAAQNNDRARILLGLNKAGQYNTEIRGDEVWVYVSESADQNVAAPAATYSASAPAAAPRATQAGQVATSA
NIDFRKGSRNSGIVELSAPTFSGSPEVKQERDRMVITLKNHPLPTQAQRNLDVGDFNTPVQNVTLKRIGNATQLIIRTKG
NWDVSSKSAAGRHTFEIVPKTAAIESRGLKNNANKSFNGRKISLDFQDVEVRTILQILSKESGVNIVASDTVNGKMTLSL
KDVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLLSQTFQLKYKNVEEFRKILRIDENG
GSSGSNNRNTLLSDRGSALIDPATNTLIITDNRTVIEKFRKLIEELDVATRQVMVEARIVEADEGFSRDLGVKFGYNGVR
GRNTWGSNLSNALKNNSTNYDNNVTRANAILSGSATIPTLNALEFSPNISLPTTNAAATSIALVRSVASGALGLELSAAE
GQNKSKTISNPRVLTQDRKEATIEAGTEIPYQEASSSGATSVSFKKAVLGLTVTPNITPDGQIIMTVKINKDTPQPCTVD
SLSTMCISTKSLNTQAMVEDGGTLIVGGIYEEESSNNVNKVPLLGDIPVVGNLFKSRAREENRRELLVFITPRIMDSVGN
NLRY

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=1099471 ACM67E_RS09900 WP_416191280.1 2152532..2154706(+) (pilQ) [Neisseria sp. CCUG12390]
ATGAAAACCAAACGCATGACAAGATTATTTGCCGGCCTGAGTATCGCGATGGCTGTTCAGACGGCCTTTGCCGGTAACAT
TACCGACATCAATGTATCTACTTTGCCCGACAATCAAAAAATCATCAAAATCCGATTTGACAAAGACATAACCAGCCCTA
CCGGCTTTGTGACTTCTACACCTGCCCGCATCGCTTTGGATTTTGCCAATACCAACATCCAACTGCCTCAGCCTGTTTTG
GAATATTCTGATCCTCTGTTGAACCAGATTACCGCAGCTCAGAATAACGACCGAGCCCGCATTCTGCTCGGTCTGAATAA
AGCAGGCCAATACAACACCGAAATCCGTGGCGATGAAGTATGGGTATATGTCAGCGAATCTGCAGATCAAAATGTGGCTG
CACCGGCTGCCACTTATTCCGCCTCTGCGCCCGCTGCCGCACCGCGCGCTACCCAGGCCGGCCAAGTTGCCACCAGTGCC
AACATTGACTTCCGCAAAGGTTCGCGCAATTCCGGCATCGTAGAATTATCCGCTCCGACCTTCTCAGGCAGCCCTGAAGT
CAAACAAGAGCGCGACCGCATGGTGATTACTTTAAAAAACCATCCGTTACCTACCCAGGCGCAACGTAATCTGGACGTAG
GCGACTTCAATACGCCGGTACAAAACGTCACTTTGAAACGTATCGGCAACGCCACCCAACTGATTATCCGCACAAAAGGC
AACTGGGATGTCAGCAGTAAATCTGCTGCCGGCCGCCATACTTTTGAAATCGTACCGAAAACTGCGGCTATCGAAAGCCG
CGGCTTGAAAAACAATGCCAACAAATCCTTTAACGGCCGCAAAATCTCTTTGGATTTCCAAGATGTGGAAGTCCGTACCA
TTTTGCAGATTTTGTCCAAAGAATCAGGTGTGAACATTGTGGCCAGCGATACGGTTAACGGCAAAATGACCTTATCGTTA
AAAGATGTGCCTTGGGATCAAGCATTGGATTTGGTGATGCAGGCGCGCAACTTAGACATGCGCCGCCAAGGCAATATCAT
CAATATCGCGCCGCGTGACGAACTTTTGGCCAAAGACAAGGCTTTCCTGCAAGCAGAAAAAGAGATTGCCGAACTCGGTC
CGTTGCTGTCACAGACCTTCCAATTGAAATACAAAAACGTCGAAGAATTCCGCAAGATTCTGCGTATTGACGAGAACGGC
GGCAGCAGCGGCAGCAACAACCGCAACACATTGCTGAGTGACCGCGGCAGCGCCTTGATCGATCCGGCTACCAATACCCT
GATCATTACCGACAACCGCACCGTCATTGAGAAATTCCGCAAGCTGATTGAAGAATTGGACGTAGCGACACGTCAAGTGA
TGGTAGAGGCGCGTATCGTGGAAGCCGATGAAGGCTTTTCACGCGACTTGGGCGTAAAATTCGGCTATAACGGTGTAAGG
GGTCGCAACACTTGGGGTTCGAACCTGTCAAACGCACTGAAAAACAATTCCACCAATTATGACAACAACGTCACTAGAGC
CAATGCTATCTTAAGCGGCTCTGCGACCATTCCGACCTTAAATGCTTTGGAATTCAGCCCGAACATCAGCCTGCCGACTA
CCAACGCAGCGGCCACATCGATTGCCTTGGTACGCTCGGTTGCTTCCGGTGCATTAGGATTGGAATTGTCTGCGGCAGAA
GGCCAAAACAAGAGCAAAACCATTTCCAATCCGCGTGTACTCACCCAAGACCGCAAAGAGGCAACGATTGAAGCCGGTAC
GGAAATCCCTTACCAGGAAGCCAGCTCCAGCGGTGCGACTTCGGTATCGTTCAAAAAAGCGGTATTGGGCTTGACGGTAA
CGCCGAATATCACGCCTGACGGCCAAATCATCATGACGGTGAAAATCAATAAAGATACGCCGCAACCATGTACCGTGGAT
TCTTTGAGCACCATGTGTATCAGCACCAAGAGCCTGAATACTCAAGCCATGGTGGAAGATGGCGGCACCTTAATTGTCGG
CGGCATTTATGAGGAAGAATCCTCCAACAATGTCAATAAAGTACCTTTGTTGGGCGATATCCCGGTAGTGGGCAACCTGT
TCAAATCACGCGCCCGCGAAGAAAACCGCCGTGAATTGCTAGTATTCATCACACCGCGCATTATGGACAGCGTAGGAAAT
AATTTGCGCTACTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(304-351)

Bacterial type II/III secretion system short domain (Secretin_N)

(378-452)

AMIN domain (AMIN)

(38-115)

Bacterial type II and III secretion system protein (Secretin)

(559-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

59.085

100

0.642
  pilQ Neisseria gonorrhoeae strain FA1090

61.6

100

0.638
  pilQ Neisseria meningitidis MC58

65.317

78.453

0.512

Multiple sequence alignment