Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   ACM67E_RS04015 Genome accession   NZ_CP181244
Coordinates   865479..866006 (-) Length   175 a.a.
NCBI ID   WP_416192324.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 860479..871006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS03995 (ACM67E_03995) bfr 861522..861986 (+) 465 WP_416192320.1 bacterioferritin -
  ACM67E_RS04000 (ACM67E_04000) bfr 862006..862479 (+) 474 WP_416192321.1 bacterioferritin -
  ACM67E_RS04005 (ACM67E_04005) - 863029..864741 (+) 1713 WP_416192322.1 proline--tRNA ligase -
  ACM67E_RS04010 (ACM67E_04010) - 864995..865477 (-) 483 WP_416192323.1 type IV pilin protein -
  ACM67E_RS04015 (ACM67E_04015) pilK 865479..866006 (-) 528 WP_416192324.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACM67E_RS04020 (ACM67E_04020) pilJ 865985..866941 (-) 957 WP_416192325.1 PilW family protein Machinery gene
  ACM67E_RS04025 (ACM67E_04025) pilV 866944..867588 (-) 645 WP_416192326.1 type IV pilus modification protein PilV -
  ACM67E_RS04030 (ACM67E_04030) pilH 867607..868278 (-) 672 WP_416192327.1 pilus assembly FimT family protein Machinery gene
  ACM67E_RS04035 (ACM67E_04035) dnaB 868442..869848 (-) 1407 WP_416192328.1 replicative DNA helicase -
  ACM67E_RS04040 (ACM67E_04040) - 870110..870502 (-) 393 WP_416192329.1 NF038104 family lipoprotein -
  ACM67E_RS04045 (ACM67E_04045) - 870499..870843 (-) 345 WP_416192330.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19387.02 Da        Isoelectric Point: 7.6636

>NTDB_id=1099451 ACM67E_RS04015 WP_416192324.1 865479..866006(-) (pilK) [Neisseria sp. CCUG12390]
MRRSTTLTAYSLKSAQHGYSLFIVLMIMIVVALLVVTAVQSYNTEQRISTNDADRKLATSLAEVALREGENQIIDFGDNP
PAFTSDCKEGRCSTTSKIWEHKCGTDLCIDKNGRKIDQANKKNTITVDGVGIISPRYVIESIGSDQDSKIYRVTAKAWGK
NQNTVVMLQSYVSDE

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1099451 ACM67E_RS04015 WP_416192324.1 865479..866006(-) (pilK) [Neisseria sp. CCUG12390]
ATGCGCCGATCGACTACTCTGACAGCCTATAGCCTGAAATCTGCCCAACACGGTTATTCATTATTCATCGTATTGATGAT
TATGATCGTTGTCGCCCTATTAGTGGTAACGGCAGTTCAATCCTACAACACTGAACAACGCATCAGTACCAATGATGCTG
ACCGTAAATTGGCAACCAGCTTGGCTGAAGTCGCTTTACGTGAGGGCGAGAATCAAATCATTGACTTTGGAGACAACCCA
CCTGCTTTTACTTCAGACTGTAAAGAAGGACGTTGCTCAACAACCAGTAAAATCTGGGAACATAAATGTGGAACAGATTT
GTGTATTGACAAAAATGGCCGAAAAATTGATCAGGCAAATAAAAAGAATACAATTACTGTCGACGGCGTGGGAATCATAA
GCCCTAGATATGTTATTGAATCGATCGGATCCGATCAAGACAGTAAAATCTACCGCGTTACCGCCAAAGCATGGGGGAAA
AACCAAAATACGGTCGTTATGCTCCAATCTTACGTATCAGATGAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(99-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

44.976

100

0.537

Multiple sequence alignment