Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACM67E_RS04030 Genome accession   NZ_CP181244
Coordinates   867607..868278 (-) Length   223 a.a.
NCBI ID   WP_416192327.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 862607..873278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS04005 (ACM67E_04005) - 863029..864741 (+) 1713 WP_416192322.1 proline--tRNA ligase -
  ACM67E_RS04010 (ACM67E_04010) - 864995..865477 (-) 483 WP_416192323.1 type IV pilin protein -
  ACM67E_RS04015 (ACM67E_04015) pilK 865479..866006 (-) 528 WP_416192324.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACM67E_RS04020 (ACM67E_04020) pilJ 865985..866941 (-) 957 WP_416192325.1 PilW family protein Machinery gene
  ACM67E_RS04025 (ACM67E_04025) pilV 866944..867588 (-) 645 WP_416192326.1 type IV pilus modification protein PilV -
  ACM67E_RS04030 (ACM67E_04030) pilH 867607..868278 (-) 672 WP_416192327.1 pilus assembly FimT family protein Machinery gene
  ACM67E_RS04035 (ACM67E_04035) dnaB 868442..869848 (-) 1407 WP_416192328.1 replicative DNA helicase -
  ACM67E_RS04040 (ACM67E_04040) - 870110..870502 (-) 393 WP_416192329.1 NF038104 family lipoprotein -
  ACM67E_RS04045 (ACM67E_04045) - 870499..870843 (-) 345 WP_416192330.1 hypothetical protein -
  ACM67E_RS04050 (ACM67E_04050) uvrB 871032..873059 (+) 2028 WP_416192331.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24805.47 Da        Isoelectric Point: 9.5596

>NTDB_id=1099453 ACM67E_RS04030 WP_416192327.1 867607..868278(-) (pilH) [Neisseria sp. CCUG12390]
MHAKQKGFTLIELLVVIAIIAIMAVIALPNMSQWIASRRAASNAEQIANLLRFARAEAVRLNLPVYVCPVKIRKDGKPLG
QCDSTAKDSGLLAFADKDYLVNPNKKQTYTNDSVDIHLRTIILNSKDSNRVIHHFSHVPKGQESLFWTFLPNGNFGYSTD
TGLTKDTKFIMSNGYIKISMTDASATNDDDKKARASVLFIDGNGRVEICPKNDSRKQCEYPTN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=1099453 ACM67E_RS04030 WP_416192327.1 867607..868278(-) (pilH) [Neisseria sp. CCUG12390]
ATGCACGCCAAACAAAAAGGTTTCACCCTTATCGAACTTCTGGTCGTGATCGCCATCATCGCAATCATGGCCGTCATCGC
CCTTCCCAACATGAGCCAATGGATCGCATCGCGCCGCGCGGCAAGCAATGCGGAACAAATCGCCAATCTCCTGCGCTTCG
CCCGAGCCGAAGCCGTCCGCCTGAATCTTCCGGTTTACGTTTGCCCCGTCAAAATCCGTAAAGATGGCAAACCCTTAGGT
CAATGCGACTCAACAGCTAAAGATAGTGGGTTACTCGCCTTTGCTGATAAAGATTACTTGGTAAACCCTAACAAAAAACA
GACCTATACAAATGATAGTGTTGATATTCATTTACGGACAATAATATTAAATTCTAAAGATTCAAATCGTGTAATTCATC
ATTTTTCCCATGTCCCAAAAGGGCAAGAAAGTCTTTTTTGGACTTTTTTGCCAAATGGTAATTTTGGTTACTCAACTGAT
ACTGGATTGACTAAAGACACCAAATTCATTATGTCTAATGGATACATTAAGATCTCCATGACTGATGCTTCGGCAACAAA
CGATGATGATAAAAAAGCACGCGCCAGCGTACTTTTTATCGATGGTAACGGCCGTGTAGAAATCTGCCCCAAAAACGATT
CACGCAAGCAATGCGAGTATCCCACGAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Type II transport protein GspH (GspH)

(44-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

54.054

99.552

0.538

Multiple sequence alignment