Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   ACM67E_RS04020 Genome accession   NZ_CP181244
Coordinates   865985..866941 (-) Length   318 a.a.
NCBI ID   WP_416192325.1    Uniprot ID   -
Organism   Neisseria sp. CCUG12390     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 860985..871941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67E_RS03995 (ACM67E_03995) bfr 861522..861986 (+) 465 WP_416192320.1 bacterioferritin -
  ACM67E_RS04000 (ACM67E_04000) bfr 862006..862479 (+) 474 WP_416192321.1 bacterioferritin -
  ACM67E_RS04005 (ACM67E_04005) - 863029..864741 (+) 1713 WP_416192322.1 proline--tRNA ligase -
  ACM67E_RS04010 (ACM67E_04010) - 864995..865477 (-) 483 WP_416192323.1 type IV pilin protein -
  ACM67E_RS04015 (ACM67E_04015) pilK 865479..866006 (-) 528 WP_416192324.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACM67E_RS04020 (ACM67E_04020) pilJ 865985..866941 (-) 957 WP_416192325.1 PilW family protein Machinery gene
  ACM67E_RS04025 (ACM67E_04025) pilV 866944..867588 (-) 645 WP_416192326.1 type IV pilus modification protein PilV -
  ACM67E_RS04030 (ACM67E_04030) pilH 867607..868278 (-) 672 WP_416192327.1 pilus assembly FimT family protein Machinery gene
  ACM67E_RS04035 (ACM67E_04035) dnaB 868442..869848 (-) 1407 WP_416192328.1 replicative DNA helicase -
  ACM67E_RS04040 (ACM67E_04040) - 870110..870502 (-) 393 WP_416192329.1 NF038104 family lipoprotein -
  ACM67E_RS04045 (ACM67E_04045) - 870499..870843 (-) 345 WP_416192330.1 hypothetical protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34451.74 Da        Isoelectric Point: 4.7011

>NTDB_id=1099452 ACM67E_RS04020 WP_416192325.1 865985..866941(-) (pilJ) [Neisseria sp. CCUG12390]
MKNKRPTFTYPSKIKGFSLIEFLVASALSLIVLMAITSTYFTARNLNSAATSRLSVQQDLRNASALLVRDARMAGSFGCF
NMTNYTESSIKSKSDDNSTAPFNLASNSTSKGLIPLSEGTVSYLGFTQSASPALIFQYGIDDNNPDADLAVASSCDNIAK
SNKIKDIDTAKDALEITSNDKDSMISVMKHIVVAYAVGELGGQKGLYRFQLDDSGSWGEPQLLIKGVESMEREYLYVDSC
PEDVVNAASSTTVQEETFVLRDSLRPDPIQSQEASTPALIRIKLNNGNKVTASSDNEIQIYNIDATVRGGNVCADRLL

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1099452 ACM67E_RS04020 WP_416192325.1 865985..866941(-) (pilJ) [Neisseria sp. CCUG12390]
ATGAAAAACAAACGCCCTACTTTCACTTACCCGTCAAAAATAAAAGGCTTCAGCCTGATTGAATTTTTGGTTGCCAGCGC
ATTAAGCCTGATTGTGCTGATGGCAATAACATCAACCTACTTTACCGCCCGTAATCTGAATAGTGCGGCTACATCGCGTC
TAAGCGTACAGCAGGATTTGCGCAATGCTTCGGCATTGCTGGTGCGTGATGCACGTATGGCCGGCAGTTTTGGCTGTTTT
AACATGACAAATTATACGGAATCATCAATCAAATCAAAATCAGATGACAACAGCACAGCCCCGTTTAATTTGGCAAGCAA
TTCTACAAGCAAAGGACTGATACCTCTTTCGGAAGGCACGGTAAGCTATCTTGGATTTACCCAGTCAGCTAGCCCTGCGT
TGATATTCCAATATGGCATTGATGACAATAATCCAGACGCAGACCTTGCTGTTGCCAGCAGTTGTGACAACATTGCCAAA
TCCAACAAAATCAAAGATATTGATACTGCCAAAGACGCTTTAGAAATAACCAGCAACGATAAAGACAGCATGATTTCCGT
CATGAAACATATTGTCGTGGCTTATGCCGTCGGAGAGCTTGGCGGTCAAAAAGGCCTATACCGCTTCCAGCTAGATGACA
GCGGTAGCTGGGGAGAGCCCCAACTCCTGATAAAAGGTGTCGAATCTATGGAGCGGGAATATCTCTATGTAGATTCCTGC
CCTGAAGATGTTGTAAACGCCGCTTCCTCAACAACAGTACAAGAAGAAACTTTTGTGCTCAGAGATTCTTTACGGCCCGA
TCCGATACAGAGTCAAGAAGCCTCTACACCTGCTTTAATACGCATTAAACTAAATAACGGAAATAAGGTAACGGCTTCTT
CCGATAATGAAATTCAAATTTACAATATTGACGCAACCGTACGGGGAGGTAATGTATGCGCCGATCGACTACTCTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

47.095

100

0.484

Multiple sequence alignment