Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACM660_RS08065 Genome accession   NZ_CP181170
Coordinates   1717633..1718340 (-) Length   235 a.a.
NCBI ID   WP_004806333.1    Uniprot ID   -
Organism   Acinetobacter sp. SEK541     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712633..1723340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS08045 (ACM660_08045) - 1713175..1713999 (+) 825 WP_005204459.1 SDR family NAD(P)-dependent oxidoreductase -
  ACM660_RS08050 (ACM660_08050) - 1714093..1715613 (+) 1521 WP_005204456.1 flavin-containing monooxygenase -
  ACM660_RS08055 (ACM660_08055) - 1715709..1716581 (+) 873 WP_005204454.1 class I SAM-dependent methyltransferase -
  ACM660_RS08060 (ACM660_08060) - 1716656..1717432 (-) 777 WP_004806331.1 M48 family metallopeptidase -
  ACM660_RS08065 (ACM660_08065) crp 1717633..1718340 (-) 708 WP_004806333.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACM660_RS08070 (ACM660_08070) - 1718489..1718911 (+) 423 WP_005204451.1 OsmC family protein -
  ACM660_RS08075 (ACM660_08075) - 1718984..1719784 (-) 801 WP_005204449.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACM660_RS08080 (ACM660_08080) clpB 1720048..1722627 (+) 2580 WP_004806339.1 ATP-dependent chaperone ClpB -
  ACM660_RS08085 (ACM660_08085) - 1722655..1722834 (+) 180 WP_017402360.1 hypothetical protein -
  ACM660_RS08090 (ACM660_08090) - 1722795..1723235 (+) 441 WP_004806342.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26612.21 Da        Isoelectric Point: 4.7478

>NTDB_id=1099384 ACM660_RS08065 WP_004806333.1 1717633..1718340(-) (crp) [Acinetobacter sp. SEK541]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENNFTEEEYDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1099384 ACM660_RS08065 WP_004806333.1 1717633..1718340(-) (crp) [Acinetobacter sp. SEK541]
ATGACTTCAAATTTTTCACAACTTAGCACTGATGCTTTATCTCCAGGTCAACTACCTGAATCAGTTAAAGCTTTGCTAAA
ACGTGCTCATATTAATAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCAGTGTCAATTATCTTACGTGAAGATGACGAACGTGAAATTGTAGTTGCCTACCTAAACCCAGGCGATTTT
TTTGGTGAAATGGGGCTTTTTGAAAAGAACCCTCAACGTACTGCAGAAGTACGTACACGAGATGTCTGTGAAATTGCAGA
AATCTCTTACGACAATTTCCACGAGTTAAGTAAACAATACCCAGATCTAAGTTACGCTGTGTTTGCTCAACTGGTCCGTC
GTCTTAAAAATACAACACGTAAAGTCACTGATCTAGCCTTCATTGATGTATCAGGTCGTATTGCGCGTTGTTTAATTGAC
TTATCGGCTCAACCTGAAGCAATGATTTTGCCAAATGGTCGTCAGATTCGTATCACCCGCCAAGAGATTGGTCGTATCGT
GGGTTGCTCTCGCGAAATGGTTGGACGTGTCCTCAAGACACTTGAAGATCAAGGTATGATTCAAACTGATGGTAAAGCTA
TCTTAATTTTTGATGCTTCTTTAGAAGAAAATAATTTTACAGAAGAAGAATACGATGACGAAGACTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

95.319

100

0.953
  crp Vibrio cholerae strain A1552

47.573

87.66

0.417
  crp Haemophilus influenzae Rd KW20

49.231

82.979

0.409

Multiple sequence alignment