Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACM660_RS01525 Genome accession   NZ_CP181170
Coordinates   318896..320332 (-) Length   478 a.a.
NCBI ID   WP_004802148.1    Uniprot ID   N8XTE8
Organism   Acinetobacter sp. SEK541     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 313896..325332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS01510 (ACM660_01510) lptG 314943..316013 (+) 1071 WP_004802141.1 LPS export ABC transporter permease LptG -
  ACM660_RS01515 (ACM660_01515) gpmI 316128..317672 (+) 1545 WP_005200599.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACM660_RS01520 (ACM660_01520) - 317682..318857 (+) 1176 WP_004802146.1 S41 family peptidase -
  ACM660_RS01525 (ACM660_01525) pilR 318896..320332 (-) 1437 WP_004802148.1 sigma-54-dependent transcriptional regulator Regulator
  ACM660_RS01530 (ACM660_01530) pilS 320358..321923 (-) 1566 WP_004802151.1 sensor histidine kinase Regulator
  ACM660_RS01535 (ACM660_01535) - 321941..322576 (-) 636 WP_004802154.1 response regulator -
  ACM660_RS01540 (ACM660_01540) pbpG 322787..323851 (+) 1065 WP_157188068.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACM660_RS01545 (ACM660_01545) - 324002..324622 (+) 621 WP_005200594.1 DUF6915 family protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 53659.55 Da        Isoelectric Point: 6.1499

>NTDB_id=1099370 ACM660_RS01525 WP_004802148.1 318896..320332(-) (pilR) [Acinetobacter sp. SEK541]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAISALKAGAFDFVSKPVNQMHLDQLIQKALNRPQPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQKISQEWDLTAKSLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDDNIDLAHLQTAPLRSSLANPAPSFSNT
TTEEVETPQYSASPNMSSKKLPPEGLERYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=1099370 ACM660_RS01525 WP_004802148.1 318896..320332(-) (pilR) [Acinetobacter sp. SEK541]
ATGGCAACAAAACAACCACTCGTCTTATTGGTAGACGACGAAGAAGATTTATGTCTTTTAATGCAGATGACGCTGGCGCG
TATGGGCATCAAGACACATCTCGCCTATCGGGTCGAACAGGCAAAAAAGTTCTTTACTGAATTCCAGTACGATGCTTGCT
TAACAGATTTAAATCTTCCAGATGGCAATGGTTTGGATCTGGTCAAACACGTGACACAGAACTATCCCAATACACCTATT
GCGGTACTGACTGCCTACGGCAATATGGATATTGCCATTTCAGCCTTAAAAGCAGGTGCATTTGACTTTGTCAGTAAACC
TGTCAACCAGATGCATTTGGATCAATTGATTCAGAAAGCATTGAACCGTCCACAGCCTGAACAAGAGGCAGCCGAAACAG
CTTTAGAGAATAAGCTATTAATTGGACGTTCTGCACCCATTCAACAGCTCCGCATTGCCTTAAAGAAAATTGCACGTTCC
CAGGCCCCAGTATTCATTACAGGTGAATCAGGAACAGGCAAAGAAGTGGTTGCGAATCTGGTCCACCGTTTAAGTAATCG
CAGCGAAGGCCCTTTTATTGCGATTAACTGTGGGGCGATTCCAACTGAATTGATGGAAAGTGAACTATTCGGGCATAAAA
AAGGCAGTTTTACTGGCGCAACTCAGGACAAGCAAGGCTTAATTCTGTCTGCACACGGCGGGAGTTTGTTCTTGGATGAA
ATTGCCGAACTACCTTTAAATATGCAGGTCAAATTGCTGCGTGCCGTACAGGAAAAGAAAATTCGTCCCGTTGGTTCAGA
TCAAGAGATTGATGTGGATTTTCGTGTGATTAGTGCCAGTCACCAAGATTTGGAACTGTTGGTACAGCAAGGTCGTTTCC
GTCAGGATTTGTTCTTCCGTATTCATGTGATGGATATCGTACTGCCACCTTTACGTGAACGTGGACAGGATATTTTGTTA
TTGGCCAATCACTTTATTCAAAAGATTAGTCAAGAATGGGACCTCACTGCAAAATCGTTATCTTCACGTGCAGAGCAGTT
CTTATTACAGCAATATTTCCCAGGTAATGTGCGCGAATTACGCAATATTATTGAACGTGCGATTACGCTGAGTGACGATG
ACAATATTGATTTGGCACATCTCCAAACTGCACCTTTACGTAGTTCATTGGCAAACCCAGCACCCTCATTTTCCAATACG
ACAACTGAAGAAGTTGAAACACCGCAATATTCTGCAAGTCCAAACATGAGTTCAAAGAAGCTTCCACCCGAAGGTTTGGA
GCGCTATTTGGAGAATATTGAAAAAGAAATTCTTCTGAATGCATTAAATCTCACCCATTGGAATCGAACCTTAGCCGCGA
AGAAGTTGGGAATGACTTTCCGTTCGTTACGCTACCGTTTGAAAAAATTCGGTTTAGATACTGAAGATGATGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8XTE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

82.845

100

0.828
  pilR Pseudomonas aeruginosa PAK

50

97.49

0.487

Multiple sequence alignment