Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACM660_RS01530 Genome accession   NZ_CP181170
Coordinates   320358..321923 (-) Length   521 a.a.
NCBI ID   WP_004802151.1    Uniprot ID   N9T525
Organism   Acinetobacter sp. SEK541     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 315358..326923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM660_RS01515 (ACM660_01515) gpmI 316128..317672 (+) 1545 WP_005200599.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACM660_RS01520 (ACM660_01520) - 317682..318857 (+) 1176 WP_004802146.1 S41 family peptidase -
  ACM660_RS01525 (ACM660_01525) pilR 318896..320332 (-) 1437 WP_004802148.1 sigma-54-dependent transcriptional regulator Regulator
  ACM660_RS01530 (ACM660_01530) pilS 320358..321923 (-) 1566 WP_004802151.1 sensor histidine kinase Regulator
  ACM660_RS01535 (ACM660_01535) - 321941..322576 (-) 636 WP_004802154.1 response regulator -
  ACM660_RS01540 (ACM660_01540) pbpG 322787..323851 (+) 1065 WP_157188068.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACM660_RS01545 (ACM660_01545) - 324002..324622 (+) 621 WP_005200594.1 DUF6915 family protein -
  ACM660_RS01550 (ACM660_01550) - 324642..325427 (+) 786 WP_005200592.1 hypothetical protein -
  ACM660_RS01555 (ACM660_01555) thrC 325494..326633 (-) 1140 WP_416178166.1 threonine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59217.78 Da        Isoelectric Point: 6.1914

>NTDB_id=1099371 ACM660_RS01530 WP_004802151.1 320358..321923(-) (pilS) [Acinetobacter sp. SEK541]
MLGKIASSVSQTVYRLGVWYSGYRLIISISLLLIYLLTAEQLSSNYVYPFLYFYTLICYIAFNIFQLFLLHLVPIQTSKQ
LIFIFLIDVICLSLITFSAGGPNLQLSLLYVIIIFSSAILLNAHLSLIITLFAVIMVVYQRFLGDFFEANNLNHLGNSVF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANALLGIHLPISLE
KTPLIKLQPDLFELVQFSDLEDGEEFSFESQQSSYTINVRVKHLIVPEQALVLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFKDSDTHQQEMLSRMISKQAKRIDSIVQDTLAMARNKPTEAQEIDLSSFFESLLNEDLADAK
QQIQIKLTEQTNILFDEKQLRQVLINLIRNALRHNATDAPYIEVEVHEKDGRTCIDVIDFGTGVSKRDISQLFKPFFSTE
IKGTGLGLYLSHTFCEANHAKLTYIERQQGACFRIECSKTH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1099371 ACM660_RS01530 WP_004802151.1 320358..321923(-) (pilS) [Acinetobacter sp. SEK541]
ATGTTAGGGAAAATTGCGTCGTCAGTCTCACAAACTGTCTATCGGCTTGGGGTTTGGTATAGTGGCTATCGGCTAATCAT
TTCGATTAGCCTGCTGTTAATTTATTTACTCACTGCTGAACAACTTTCCAGCAACTATGTTTATCCCTTCTTATATTTTT
ATACCTTGATTTGCTATATCGCATTCAATATTTTTCAACTGTTTTTACTACATCTTGTCCCGATACAGACCTCAAAGCAG
TTGATTTTTATCTTTCTGATTGATGTCATTTGCCTAAGCTTAATCACATTCTCTGCAGGTGGTCCAAATCTGCAACTCAG
CTTGCTTTACGTCATTATTATTTTTTCTTCTGCGATATTATTAAACGCTCACCTGTCGCTGATTATTACTTTATTTGCCG
TCATTATGGTGGTTTACCAACGTTTTTTAGGTGACTTTTTTGAGGCCAATAATTTAAATCACCTCGGAAATAGCGTTTTT
CTGGCGTTTTTATTTTTTGTAGTTCATGCCATTGGTCGTATTGCAGTACAGCGTTTTAAAATTCTAGAAACCTTAACCTT
TCATCAATCCATTGAAATCCATCAACTACAGAATATTAACCGCTATATCTTAGAACAAATCGAAGATGGCTATTTAGTAC
TGGATGAAAGTAACCATATCGTATTAACCAATCCTGCAGCCAATGCGCTATTAGGTATCCATTTACCGATTTCCTTAGAA
AAAACGCCACTGATCAAATTACAACCCGACTTATTTGAACTGGTTCAGTTTAGTGACTTAGAAGATGGCGAAGAATTCAG
TTTTGAATCACAGCAAAGTTCATACACCATCAACGTTCGGGTTAAGCATCTAATTGTTCCTGAACAAGCCTTAGTGTTAT
TGATCTTAAAAGATGCACAGAAACTGACTCAGCAAGTTCAGCAATTGAAACTCGCCGCACTTGGTCAGCTGTCAGCCAGT
ATTGCCCATGAAATTCGCAATCCTTTGGCTGCTATTGTGCAAGCCAATGAATTATTCAAAGACAGTGATACCCACCAACA
AGAAATGCTGTCGCGCATGATTAGCAAACAAGCCAAACGGATTGATAGCATCGTGCAAGACACCTTAGCAATGGCACGAA
ATAAACCGACAGAAGCACAAGAAATTGATCTGAGCTCCTTCTTTGAAAGTTTACTCAATGAAGATCTTGCAGATGCTAAA
CAACAAATTCAAATTAAACTCACAGAGCAAACCAACATCTTATTTGATGAAAAACAATTACGCCAAGTGCTGATTAATTT
AATTAGAAATGCGTTAAGACATAATGCAACTGACGCGCCTTATATTGAAGTCGAGGTGCACGAAAAAGACGGACGAACTT
GCATTGATGTCATCGATTTTGGGACGGGTGTCTCAAAACGGGATATTTCTCAACTGTTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTATTTGTCTCATACTTTTTGTGAGGCAAATCATGCAAAGCTCACTTATATAGAGCG
ACAACAAGGAGCATGCTTCAGGATTGAATGCTCAAAAACTCATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9T525

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.039

98.273

0.639

Multiple sequence alignment