Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACGHTT_RS17890 Genome accession   NZ_AP031497
Coordinates   4044410..4044805 (-) Length   131 a.a.
NCBI ID   WP_183907265.1    Uniprot ID   -
Organism   Simiduia litorea strain KMM 9504     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4039410..4049805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHTT_RS17870 (R50072_35710) - 4040282..4041118 (-) 837 WP_390592350.1 CheR family methyltransferase -
  ACGHTT_RS17875 (R50072_35720) - 4041168..4043324 (-) 2157 WP_390592351.1 methyl-accepting chemotaxis protein -
  ACGHTT_RS17880 (R50072_35730) - 4043401..4043955 (-) 555 WP_290259696.1 chemotaxis protein CheW -
  ACGHTT_RS17885 (R50072_35740) pilH 4043986..4044348 (-) 363 WP_290259697.1 twitching motility response regulator PilH -
  ACGHTT_RS17890 (R50072_35750) pilG 4044410..4044805 (-) 396 WP_183907265.1 twitching motility response regulator PilG Regulator
  ACGHTT_RS17895 (R50072_35770) gshB 4045131..4046096 (+) 966 WP_390592353.1 glutathione synthase -
  ACGHTT_RS17900 (R50072_35780) - 4046101..4047012 (+) 912 WP_390592354.1 energy transducer TonB -
  ACGHTT_RS17905 (R50072_35790) - 4047051..4047644 (+) 594 WP_390592355.1 YqgE/AlgH family protein -
  ACGHTT_RS17910 (R50072_35800) ruvX 4047641..4048066 (+) 426 WP_390592356.1 Holliday junction resolvase RuvX -
  ACGHTT_RS17915 (R50072_35810) pilU 4048142..4049284 (-) 1143 WP_390592357.1 PilT/PilU family type 4a pilus ATPase Machinery gene

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14284.56 Da        Isoelectric Point: 7.8221

>NTDB_id=109911 ACGHTT_RS17890 WP_183907265.1 4044410..4044805(-) (pilG) [Simiduia litorea strain KMM 9504]
MDVNLESLKVMVIDDSKTIRRTAETLLNKAGCTVITATDGFDALAKIADTRPDIIFVDIMMPRLDGYQTCALIKNNSEFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKTELLGAIQTHVGQAKAS

Nucleotide


Download         Length: 396 bp        

>NTDB_id=109911 ACGHTT_RS17890 WP_183907265.1 4044410..4044805(-) (pilG) [Simiduia litorea strain KMM 9504]
ATGGACGTCAATCTGGAAAGCCTGAAAGTTATGGTGATCGACGACAGTAAAACGATTCGTCGAACAGCTGAAACATTACT
GAATAAGGCCGGTTGTACTGTCATTACAGCAACCGATGGTTTTGATGCGCTGGCGAAGATCGCCGATACAAGGCCTGATA
TCATCTTTGTAGATATCATGATGCCGCGTTTAGATGGCTATCAAACTTGTGCACTTATTAAGAATAATAGCGAGTTTAAA
TCGACTCCAGTAATCATGCTATCGAGCAAGGATGGCCTTTTTGATAAGGCTAAAGGCAGGATAGTAGGCTCTGATCAATA
TTTGACTAAGCCATTCTCAAAGACGGAACTGCTTGGTGCTATCCAGACTCACGTGGGTCAGGCAAAGGCATCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

95.42

0.718
  vicR Streptococcus mutans UA159

41.322

92.366

0.382

Multiple sequence alignment