Detailed information NTG0109888

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACGHM3_RS20995
• Genome accession: NZ_AP031496
• Coordinates: 4917391..4918782 (+)
• Length: 463 a.a.
• NCBI ID: WP_345426874.1
• Uniprot ID: A0AAV3U840
• Organism: Halioxenophilus aromaticivorans strain KU68F
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4912391..4923782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGHM3_RS20980 (R50071_41820)	-	4912766..4913758 (+)	993	WP_345426880.1	outer membrane protein assembly factor BamD	-
ACGHM3_RS20985 (R50071_41830)	-	4913963..4915594 (-)	1632	WP_345426878.1	NAD+ synthase	-
ACGHM3_RS20990 (R50071_41840)	-	4915732..4917357 (+)	1626	WP_345426876.1	ATP-binding protein	-
ACGHM3_RS20995 (R50071_41850)	pilR	4917391..4918782 (+)	1392	WP_345426874.1	sigma-54 dependent transcriptional regulator	Regulator
ACGHM3_RS21000 (R50071_41860)	-	4918949..4919515 (+)	567	WP_345426872.1	GspH/FimT family pseudopilin	-
ACGHM3_RS21005 (R50071_41870)	-	4919724..4920749 (+)	1026	WP_390517130.1	IS630 family transposase	-
ACGHM3_RS21010 (R50071_41880)	-	4920862..4922556 (+)	1695	WP_345417019.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 51017.02 Da
• Isoelectric Point: 4.9085

>NTDB_id=109888 ACGHM3_RS20995 WP_345426874.1 4917391..4918782(+) (pilR) [Halioxenophilus aromaticivorans strain KU68F]
MTNQALIIDDEPDILELLDITLTRMGISADRAENLSVARKLLATNRYQLCLTDMRLPDGNGIELVKEIQHQHPQTPVVVF
TAHGNMDTAIEAMKAGAYDFITKPVDLEQLRQLVTSAVAVTTTPTAVNVQESLIKGQSPAIVNLREKIIKLARSQAPVFI
SGESGSGKELVARSIHLQGPRAQAPFVAVNCGAIPAELVESEFFGHRKGSFTGAQKDKPGLFQAAHGGTLFLDEVADLPL
DMQVKLLRAIQEKAIRAIGDAEETKIDVRILSASHKDLTEAIANGEFRADLYYRINVIDAPVPPLRQRGEDIVLLAEYFL
EQFAQDYNDEKAPLTENAKSALLNYDFPGNVRELHNILERAYTLCDGHVIDALDLQLNVLPNSAHLGAAPGPGAQPEPRS
NTATGYDESIPLDDYLSDIERDILLNTLDKYRWNRTLAAKALGITFRSLRYRLKKLGLDNDEQ

Nucleotide

• Length: 1392 bp

>NTDB_id=109888 ACGHM3_RS20995 WP_345426874.1 4917391..4918782(+) (pilR) [Halioxenophilus aromaticivorans strain KU68F]
ATGACCAACCAGGCACTCATCATCGACGACGAGCCAGATATCCTAGAACTCTTGGATATCACCCTCACCCGAATGGGCAT
CAGCGCAGACCGGGCAGAAAACCTCAGCGTGGCCCGCAAGTTACTGGCTACCAATCGCTATCAATTGTGCCTCACCGATA
TGCGCCTACCCGATGGCAACGGTATTGAGTTGGTCAAAGAGATTCAGCACCAGCATCCGCAAACGCCGGTGGTGGTGTTT
ACGGCCCACGGCAATATGGATACCGCCATAGAGGCCATGAAGGCCGGTGCCTACGATTTTATTACCAAACCGGTAGACCT
AGAACAACTGCGCCAACTGGTGACCTCAGCTGTGGCGGTTACCACCACCCCCACAGCCGTCAACGTCCAAGAATCGTTAA
TCAAAGGCCAATCCCCGGCCATCGTTAACTTACGCGAAAAAATCATCAAGCTGGCGCGCTCCCAAGCACCGGTGTTTATT
AGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCGCGCTCCATTCACCTGCAAGGCCCCAGGGCCCAGGCGCCTTTCGT
GGCCGTCAACTGCGGGGCTATTCCTGCCGAGTTGGTGGAGAGCGAGTTTTTCGGCCATCGCAAGGGCAGCTTTACCGGTG
CCCAAAAGGACAAGCCCGGCCTGTTCCAAGCCGCCCATGGAGGCACGTTGTTTTTGGATGAAGTGGCCGACCTGCCCCTG
GACATGCAGGTGAAGCTTTTGCGAGCCATTCAAGAAAAGGCCATTAGGGCCATTGGCGATGCCGAAGAAACCAAAATCGA
TGTGCGCATTCTCAGCGCCAGTCACAAAGACTTAACCGAAGCCATTGCCAACGGCGAATTCCGCGCTGACCTGTACTACC
GGATTAATGTGATCGACGCCCCGGTGCCTCCCCTACGCCAACGCGGCGAAGACATTGTGTTGCTGGCCGAGTATTTCTTA
GAACAATTCGCCCAGGATTACAACGACGAAAAAGCCCCACTGACCGAGAACGCTAAAAGCGCGTTGCTTAATTACGATTT
CCCCGGCAACGTGCGTGAGCTGCATAATATATTAGAGCGCGCGTATACGCTGTGCGATGGGCACGTTATCGATGCCTTAG
ATTTACAACTGAATGTTTTACCTAACTCTGCACATTTGGGCGCAGCGCCTGGGCCCGGAGCGCAACCGGAGCCGCGCAGC
AACACCGCCACCGGTTACGACGAGTCCATCCCCTTGGATGATTACCTGAGCGATATCGAGCGCGACATATTACTCAACAC
CCTGGATAAATACCGTTGGAACCGCACGCTGGCGGCCAAGGCCTTGGGCATTACCTTTCGCTCGCTGCGCTATCGTTTAA
AAAAACTGGGCCTGGATAACGACGAACAATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (416-456)

• Response regulator receiver domain (Response_reg) (6-114)

• Sigma-54 interaction domain (Sigma54_activat) (135-298)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.3	98.704	0.585
pilR	Acinetobacter baumannii strain A118	50	100	0.501