Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABXG87_RS08075 Genome accession   NZ_AP031488
Coordinates   1730288..1731019 (-) Length   243 a.a.
NCBI ID   WP_002884531.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1725288..1736019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS08050 (Ssa13956_15290) - 1726356..1727537 (+) 1182 WP_353551434.1 NAD(P)/FAD-dependent oxidoreductase -
  ABXG87_RS08060 (Ssa13956_15300) trmB 1727754..1728395 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ABXG87_RS08065 (Ssa13956_15310) - 1728405..1729196 (-) 792 WP_002884270.1 phosphotransferase family protein -
  ABXG87_RS08070 (Ssa13956_15320) pptB 1729254..1730291 (-) 1038 WP_195320427.1 ABC transporter permease Regulator
  ABXG87_RS08075 (Ssa13956_15330) pptA 1730288..1731019 (-) 732 WP_002884531.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS08080 (Ssa13956_15340) - 1731084..1731503 (+) 420 WP_002891660.1 HIT family protein -
  ABXG87_RS08085 (Ssa13956_15350) - 1731500..1731799 (+) 300 WP_080610807.1 hypothetical protein -
  ABXG87_RS08090 (Ssa13956_15360) - 1731980..1732147 (-) 168 WP_353551437.1 hypothetical protein -
  ABXG87_RS08095 (Ssa13956_15370) - 1732724..1733332 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  ABXG87_RS08100 (Ssa13956_15380) - 1733350..1733475 (-) 126 WP_002884447.1 hypothetical protein -
  ABXG87_RS08105 (Ssa13956_15390) - 1733911..1736016 (-) 2106 WP_002891663.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26860.11 Da        Isoelectric Point: 4.4855

>NTDB_id=109811 ABXG87_RS08075 WP_002884531.1 1730288..1731019(-) (pptA) [Streptococcus salivarius strain NBRC 13956]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDSASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLEELRQTFGDESASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=109811 ABXG87_RS08075 WP_002884531.1 1730288..1731019(-) (pptA) [Streptococcus salivarius strain NBRC 13956]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATTCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTCTATGAAGAGTTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGGATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGATTAGATGAAAAATTGGACTGGTTCCCGACTCAGTTTT
CAAAGGGAATGAAGCAGAAGGTTATGATTATCTGTGCCTTTATTGTTAACCCCAGTCTTTTCATTGTTGATGAACCCTTC
TTGGGTTTGGATCCCTTGGCAATCTCCGACCTAATTGAGCTTTTAGCTGAGGAAAAAGCTAAGGGCAAGGCGATTCTCAT
GTCTACCCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGGTCTTAGCACAGG
GGACTCTCGAGGAGCTACGTCAGACTTTTGGCGATGAGAGTGCTAGTCTTAACGATATCTACATGCAGCTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

98.765

100

0.988
  pptA Streptococcus thermophilus LMD-9

97.119

100

0.971

Multiple sequence alignment