Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ABXG87_RS08070 Genome accession   NZ_AP031488
Coordinates   1729254..1730291 (-) Length   345 a.a.
NCBI ID   WP_195320427.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1724254..1735291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS08045 (Ssa13956_15280) ilvD 1724525..1726228 (-) 1704 WP_324250087.1 dihydroxy-acid dehydratase -
  ABXG87_RS08050 (Ssa13956_15290) - 1726356..1727537 (+) 1182 WP_353551434.1 NAD(P)/FAD-dependent oxidoreductase -
  ABXG87_RS08060 (Ssa13956_15300) trmB 1727754..1728395 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ABXG87_RS08065 (Ssa13956_15310) - 1728405..1729196 (-) 792 WP_002884270.1 phosphotransferase family protein -
  ABXG87_RS08070 (Ssa13956_15320) pptB 1729254..1730291 (-) 1038 WP_195320427.1 ABC transporter permease Regulator
  ABXG87_RS08075 (Ssa13956_15330) pptA 1730288..1731019 (-) 732 WP_002884531.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS08080 (Ssa13956_15340) - 1731084..1731503 (+) 420 WP_002891660.1 HIT family protein -
  ABXG87_RS08085 (Ssa13956_15350) - 1731500..1731799 (+) 300 WP_080610807.1 hypothetical protein -
  ABXG87_RS08090 (Ssa13956_15360) - 1731980..1732147 (-) 168 WP_353551437.1 hypothetical protein -
  ABXG87_RS08095 (Ssa13956_15370) - 1732724..1733332 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  ABXG87_RS08100 (Ssa13956_15380) - 1733350..1733475 (-) 126 WP_002884447.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40002.51 Da        Isoelectric Point: 10.5822

>NTDB_id=109810 ABXG87_RS08070 WP_195320427.1 1729254..1730291(-) (pptB) [Streptococcus salivarius strain NBRC 13956]
MIAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLIPFWGNIATYLE
PADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQS
GLNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAICLFDLKF
SLILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=109810 ABXG87_RS08070 WP_195320427.1 1729254..1730291(-) (pptB) [Streptococcus salivarius strain NBRC 13956]
ATGATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGCCGCTACGTCTTTAATGA
TCACTTTATCTTGGTTCTTCTCTTTCTGCTAGGCTTTGTCTTAGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAA
ATCCGTGGGCAATCATTCTTGGCTTGCTTGTGCTTTGTCTGTTAATACCTTTCTGGGGGAATATTGCGACTTATCTAGAA
CCTGCGGACAAGCACTACCTTTTGGTTAAGGAAGAAGAGGTACTAGACCATGTTAAGAAGGCAACAGGACGTGCTTTTAG
ATTTTGGGTAATCGTACAAAGCCTGATTTTTATTTTGGTTATTCCGCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAG
TTATCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTCATTTTTCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCT
GGACTGAATTGGACTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAAGGGATTACGTCGAGTGTTAAACGCCGTGCTTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAAC
ATACTTGGTACAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGGGATTACTTTGCCCTTAGTTTACGCCTGTTTGCCCTA
ACACTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGTTGGCTATGGTGCTTGTGGTTGTTTTTGATTACCTCTTGCTCTT
TCAGCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTAA
GCAATCTTAAGCGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTATTTGTCTCTTCGACCTTAAGTTT
AGCCTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

97.093

99.71

0.968

  pptB Streptococcus thermophilus LMD-9

92.442

99.71

0.922


Multiple sequence alignment