Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABXG87_RS07760 Genome accession   NZ_AP031488
Coordinates   1664933..1665631 (-) Length   232 a.a.
NCBI ID   WP_013991034.1    Uniprot ID   A0AAP3Q627
Organism   Streptococcus salivarius strain NBRC 13956     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1659933..1670631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS07745 (Ssa13956_14660) - 1660744..1661289 (-) 546 WP_013991031.1 GNAT family N-acetyltransferase -
  ABXG87_RS07750 (Ssa13956_14670) - 1661355..1662617 (-) 1263 WP_353551394.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ABXG87_RS07755 comEC/celB 1662703..1664943 (-) 2241 WP_013991033.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABXG87_RS07760 (Ssa13956_14690) comEA 1664933..1665631 (-) 699 WP_013991034.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABXG87_RS07765 (Ssa13956_14700) - 1665739..1666494 (-) 756 WP_013991035.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ABXG87_RS07770 (Ssa13956_14710) - 1666624..1667559 (+) 936 WP_045002039.1 polysaccharide deacetylase family protein -
  ABXG87_RS07775 (Ssa13956_14720) - 1667609..1668373 (+) 765 WP_013991037.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ABXG87_RS07780 (Ssa13956_14730) - 1668377..1668646 (+) 270 WP_013991038.1 GIY-YIG nuclease family protein -
  ABXG87_RS07785 (Ssa13956_14740) - 1668702..1670288 (-) 1587 WP_004183188.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 24503.36 Da        Isoelectric Point: 4.4966

>NTDB_id=109809 ABXG87_RS07760 WP_013991034.1 1664933..1665631(-) (comEA) [Streptococcus salivarius strain NBRC 13956]
MKEKILAYVKDNCLFVSVIAVLMVIFCFFLWMTYCAGNSMEAETSYTDVTALSTSSSSKQSSQSLSEASSQSKTEGSEKD
ESKVTVDVKGAVANPGVYTLKASARVTDAIKAAGGMTEDADAKSVNLAASLSDEEVVYVATKDENLSVLGQSGTGQVSDK
GGQTSAKDGKINLNTATSEELQTISGIGAKRAEDIIAYRESHGGFQSIDDLKNVSGIGEKTLDKIRESLYVA

Nucleotide


Download         Length: 699 bp        

>NTDB_id=109809 ABXG87_RS07760 WP_013991034.1 1664933..1665631(-) (comEA) [Streptococcus salivarius strain NBRC 13956]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATTGTCTGTTTGTGAGTGTTATTGCTGTACTGATGGTGATTTTTTG
CTTCTTCCTATGGATGACTTACTGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CCTCCTCCTCCTCCAAACAAAGCTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACTGAAGGAAGTGAAAAGGAT
GAGTCAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGCTAATCCGGGTGTTTATACCTTAAAAGCAAGCGCTAGGGTGAC
TGATGCCATCAAAGCCGCTGGGGGAATGACTGAGGATGCGGATGCTAAGAGTGTTAACTTAGCTGCAAGCTTGTCAGACG
AAGAGGTTGTCTATGTGGCAACTAAGGATGAAAACCTCTCTGTTCTTGGTCAATCAGGAACTGGTCAGGTCTCTGATAAA
GGAGGGCAAACTAGTGCTAAGGATGGCAAAATTAACTTAAATACAGCGACCTCAGAGGAGTTGCAAACCATTTCTGGGAT
TGGAGCTAAGCGTGCTGAGGATATCATTGCCTATCGTGAAAGTCATGGTGGCTTTCAATCCATAGATGACTTGAAAAATG
TCTCAGGAATTGGTGAAAAAACTTTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-229)

SLBB domain (SLBB)

(86-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

87.5

100

0.875
  comEA/celA/cilE Streptococcus mitis SK321

40

99.138

0.397
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.565

99.138

0.392

Multiple sequence alignment