Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACM1TL_RS17940 | Genome accession | NZ_CP181080 |
| Coordinates | 3494609..3495175 (-) | Length | 188 a.a. |
| NCBI ID | WP_048395233.1 | Uniprot ID | A0AAE8QKV7 |
| Organism | Lysinibacillus capsici strain S2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3464971..3504775 | 3494609..3495175 | within | 0 |
Gene organization within MGE regions
Location: 3464971..3504775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM1TL_RS17805 (ACM1TL_17805) | - | 3464971..3465510 (-) | 540 | WP_054548832.1 | VUT family protein | - |
| ACM1TL_RS17810 (ACM1TL_17810) | queE | 3465552..3466280 (-) | 729 | WP_004233410.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| ACM1TL_RS17815 (ACM1TL_17815) | queD | 3466273..3466743 (-) | 471 | WP_048395264.1 | 6-carboxytetrahydropterin synthase QueD | - |
| ACM1TL_RS17820 (ACM1TL_17820) | queC | 3466747..3467406 (-) | 660 | WP_054548829.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| ACM1TL_RS17825 (ACM1TL_17825) | queF | 3467511..3468011 (-) | 501 | WP_004233404.1 | preQ(1) synthase | - |
| ACM1TL_RS17830 (ACM1TL_17830) | - | 3468493..3472182 (+) | 3690 | WP_416141243.1 | S8 family serine peptidase | - |
| ACM1TL_RS17835 (ACM1TL_17835) | - | 3472382..3473110 (-) | 729 | WP_167444822.1 | amino acid ABC transporter ATP-binding protein | - |
| ACM1TL_RS17840 (ACM1TL_17840) | - | 3473138..3473803 (-) | 666 | WP_004233396.1 | amino acid ABC transporter permease | - |
| ACM1TL_RS17845 (ACM1TL_17845) | - | 3473835..3474617 (-) | 783 | WP_416141244.1 | transporter substrate-binding domain-containing protein | - |
| ACM1TL_RS17850 (ACM1TL_17850) | rlmH | 3474850..3475329 (-) | 480 | WP_131521736.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| ACM1TL_RS17855 (ACM1TL_17855) | - | 3475420..3475584 (-) | 165 | WP_004233391.1 | CxxH/CxxC protein | - |
| ACM1TL_RS17860 (ACM1TL_17860) | - | 3475830..3477125 (-) | 1296 | WP_048395254.1 | S1C family serine protease | - |
| ACM1TL_RS17865 (ACM1TL_17865) | - | 3477292..3478080 (-) | 789 | WP_048395252.1 | MBL fold metallo-hydrolase | - |
| ACM1TL_RS17870 (ACM1TL_17870) | - | 3478080..3478904 (-) | 825 | WP_279493516.1 | two-component system regulatory protein YycI | - |
| ACM1TL_RS17875 (ACM1TL_17875) | - | 3478891..3480216 (-) | 1326 | WP_269898066.1 | YycH family regulatory protein | - |
| ACM1TL_RS17880 (ACM1TL_17880) | walK | 3480213..3482078 (-) | 1866 | WP_048395245.1 | cell wall metabolism sensor histidine kinase WalK | - |
| ACM1TL_RS17885 (ACM1TL_17885) | yycF | 3482084..3482797 (-) | 714 | WP_036077923.1 | response regulator YycF | - |
| ACM1TL_RS17890 (ACM1TL_17890) | - | 3483012..3484472 (-) | 1461 | WP_066038354.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| ACM1TL_RS17895 (ACM1TL_17895) | - | 3484850..3485713 (+) | 864 | WP_181574674.1 | YitT family protein | - |
| ACM1TL_RS17900 (ACM1TL_17900) | - | 3485758..3487047 (-) | 1290 | WP_004233375.1 | adenylosuccinate synthase | - |
| ACM1TL_RS17905 (ACM1TL_17905) | dnaB | 3487292..3488653 (-) | 1362 | WP_004233370.1 | replicative DNA helicase | - |
| ACM1TL_RS17910 (ACM1TL_17910) | rplI | 3488667..3489113 (-) | 447 | WP_004233368.1 | 50S ribosomal protein L9 | - |
| ACM1TL_RS17915 (ACM1TL_17915) | - | 3489113..3491083 (-) | 1971 | WP_004233367.1 | DHH family phosphoesterase | - |
| ACM1TL_RS17920 (ACM1TL_17920) | - | 3491097..3492038 (-) | 942 | WP_048395235.1 | YybS family protein | - |
| ACM1TL_RS17925 (ACM1TL_17925) | - | 3492501..3493250 (-) | 750 | WP_279493524.1 | hypothetical protein | - |
| ACM1TL_RS17930 (ACM1TL_17930) | - | 3493250..3493741 (-) | 492 | WP_416141245.1 | RNA polymerase sigma factor | - |
| ACM1TL_RS17935 (ACM1TL_17935) | rpsR | 3494332..3494568 (-) | 237 | WP_012296211.1 | 30S ribosomal protein S18 | - |
| ACM1TL_RS17940 (ACM1TL_17940) | ssbA | 3494609..3495175 (-) | 567 | WP_048395233.1 | single-stranded DNA-binding protein | Machinery gene |
| ACM1TL_RS17945 (ACM1TL_17945) | rpsF | 3495219..3495506 (-) | 288 | WP_016992320.1 | 30S ribosomal protein S6 | - |
| ACM1TL_RS17950 (ACM1TL_17950) | - | 3495683..3496252 (+) | 570 | WP_103119041.1 | DUF3267 domain-containing protein | - |
| ACM1TL_RS17955 (ACM1TL_17955) | - | 3496320..3497360 (-) | 1041 | WP_326141250.1 | acyl-CoA dehydrogenase | - |
| ACM1TL_RS17960 (ACM1TL_17960) | ychF | 3497446..3498546 (-) | 1101 | WP_016994923.1 | redox-regulated ATPase YchF | - |
| ACM1TL_RS17965 (ACM1TL_17965) | - | 3498644..3498844 (-) | 201 | WP_048395226.1 | DUF951 domain-containing protein | - |
| ACM1TL_RS17970 (ACM1TL_17970) | - | 3498846..3499718 (-) | 873 | WP_048395224.1 | mechanosensitive ion channel family protein | - |
| ACM1TL_RS17975 (ACM1TL_17975) | yyaC | 3499810..3500442 (+) | 633 | WP_048395222.1 | spore protease YyaC | - |
| ACM1TL_RS17980 (ACM1TL_17980) | - | 3500362..3501075 (-) | 714 | WP_048395220.1 | DUF554 domain-containing protein | - |
| ACM1TL_RS17985 (ACM1TL_17985) | - | 3501154..3502002 (-) | 849 | WP_048395218.1 | ParB/RepB/Spo0J family partition protein | - |
| ACM1TL_RS17990 (ACM1TL_17990) | - | 3501995..3502756 (-) | 762 | WP_048395216.1 | ParA family protein | - |
| ACM1TL_RS17995 (ACM1TL_17995) | noc | 3502980..3503879 (-) | 900 | WP_048395215.1 | nucleoid occlusion protein | - |
| ACM1TL_RS18000 (ACM1TL_18000) | rsmG | 3504059..3504775 (-) | 717 | WP_066038358.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20507.48 Da Isoelectric Point: 4.7719
>NTDB_id=1098057 ACM1TL_RS17940 WP_048395233.1 3494609..3495175(-) (ssbA) [Lysinibacillus capsici strain S2]
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRAFSNQQGEREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDSYQQNQPPMN
QPNYTRVDEDPFANSKGPIEVSEDDLPF
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRAFSNQQGEREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDSYQQNQPPMN
QPNYTRVDEDPFANSKGPIEVSEDDLPF
Nucleotide
Download Length: 567 bp
>NTDB_id=1098057 ACM1TL_RS17940 WP_048395233.1 3494609..3495175(-) (ssbA) [Lysinibacillus capsici strain S2]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCGAATGGAGTTGCGTCTAC
AAGATTTACAGTAGCTGTAAACCGTGCATTCTCAAATCAACAAGGTGAACGCGAAGCTGATTTCATTAGCTGTGTTGCTT
GGCGTAAACAGGCTGAAAACCTTGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAGACAGGC
AGTTATGAAGGACAAGATGGTAAGCGAGTATACACAACAGATGTCGTGGCGGATAGCGTACAGTTTTTAGAACCCCGTAA
TGGTAGCGGTGCTCCTGCTCCTCAATATGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAACCAC
AACAACAGTTTGGTGGCGCTATGCCAGGGCAGGGTTCCTATGGCGGCGATTCGTATCAGCAAAATCAACCACCTATGAAT
CAGCCGAATTATACACGTGTAGATGAGGATCCATTTGCGAATAGCAAAGGGCCAATAGAAGTATCTGAGGATGATCTTCC
ATTCTAA
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCGAATGGAGTTGCGTCTAC
AAGATTTACAGTAGCTGTAAACCGTGCATTCTCAAATCAACAAGGTGAACGCGAAGCTGATTTCATTAGCTGTGTTGCTT
GGCGTAAACAGGCTGAAAACCTTGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAGACAGGC
AGTTATGAAGGACAAGATGGTAAGCGAGTATACACAACAGATGTCGTGGCGGATAGCGTACAGTTTTTAGAACCCCGTAA
TGGTAGCGGTGCTCCTGCTCCTCAATATGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAACCAC
AACAACAGTTTGGTGGCGCTATGCCAGGGCAGGGTTCCTATGGCGGCGATTCGTATCAGCAAAATCAACCACCTATGAAT
CAGCCGAATTATACACGTGTAGATGAGGATCCATTTGCGAATAGCAAAGGGCCAATAGAAGTATCTGAGGATGATCTTCC
ATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.211 |
100 |
0.548 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
47.872 |
100 |
0.479 |