Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACLSQ1_RS04825 Genome accession   NZ_CP180722
Coordinates   595235..595597 (-) Length   120 a.a.
NCBI ID   WP_016765913.1    Uniprot ID   A0A1I2XGS5
Organism   Priestia megaterium strain C/CMAD 2.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 590235..600597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSQ1_RS04815 (ACLSQ1_04815) - 590723..593353 (+) 2631 WP_064472198.1 DEAD/DEAH box helicase -
  ACLSQ1_RS04820 (ACLSQ1_04820) - 593651..594697 (+) 1047 WP_063670706.1 LysM peptidoglycan-binding domain-containing protein -
  ACLSQ1_RS04825 (ACLSQ1_04825) ssbB 595235..595597 (-) 363 WP_016765913.1 single-stranded DNA-binding protein Machinery gene
  ACLSQ1_RS04830 (ACLSQ1_04830) - 595694..596131 (+) 438 WP_014457773.1 YwpF-like family protein -
  ACLSQ1_RS04835 (ACLSQ1_04835) - 596655..597077 (+) 423 WP_013059787.1 helix-turn-helix domain-containing protein -
  ACLSQ1_RS04840 (ACLSQ1_04840) fabZ 597106..597540 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACLSQ1_RS04845 (ACLSQ1_04845) - 597624..598445 (-) 822 WP_098277600.1 flagellar hook-basal body protein -
  ACLSQ1_RS04850 (ACLSQ1_04850) - 598469..599293 (-) 825 WP_029319385.1 flagellar hook-basal body protein -
  ACLSQ1_RS04855 (ACLSQ1_04855) - 599408..600409 (-) 1002 WP_013059791.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13472.19 Da        Isoelectric Point: 7.1647

>NTDB_id=1097634 ACLSQ1_RS04825 WP_016765913.1 595235..595597(-) (ssbB) [Priestia megaterium strain C/CMAD 2.2]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1097634 ACLSQ1_RS04825 WP_016765913.1 595235..595597(-) (ssbB) [Priestia megaterium strain C/CMAD 2.2]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I2XGS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467

Multiple sequence alignment