Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABWV75_RS07965 Genome accession   NZ_AP031487
Coordinates   1571638..1572510 (-) Length   290 a.a.
NCBI ID   WP_353317736.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1566638..1577510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWV75_RS07950 (SKB0068_15420) xerC 1567099..1567992 (-) 894 WP_087436533.1 tyrosine recombinase XerC -
  ABWV75_RS07955 (SKB0068_15430) trmFO 1568098..1569405 (-) 1308 WP_002448834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABWV75_RS07960 (SKB0068_15440) topA 1569430..1571499 (-) 2070 WP_353317735.1 type I DNA topoisomerase -
  ABWV75_RS07965 (SKB0068_15450) dprA 1571638..1572510 (-) 873 WP_353317736.1 DNA-processing protein DprA Machinery gene
  ABWV75_RS07970 (SKB0068_15460) sucD 1572768..1573673 (-) 906 WP_353317738.1 succinate--CoA ligase subunit alpha -
  ABWV75_RS07975 (SKB0068_15470) sucC 1573695..1574861 (-) 1167 WP_353317739.1 ADP-forming succinate--CoA ligase subunit beta -
  ABWV75_RS07980 (SKB0068_15480) - 1574978..1575745 (-) 768 WP_353317741.1 ribonuclease HII -
  ABWV75_RS07985 (SKB0068_15490) ylqF 1575729..1576613 (-) 885 WP_049336491.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33535.65 Da        Isoelectric Point: 8.2454

>NTDB_id=109753 ABWV75_RS07965 WP_353317736.1 1571638..1572510(-) (dprA) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEISYDYIQTQLSRSQVNYVTSF
SSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGIVGSREATHYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYCFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=109753 ABWV75_RS07965 WP_353317736.1 1571638..1572510(-) (dprA) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGTTCAATTTGAAATGATTAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAGAAGAGATTTCTTACGATTACATTCAAACTCAACTTTCTAGATCTCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTCCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACATATACTTTAGGTATTGTAGGTTCACGTGAGGCCACTCATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTCCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCACTATCCAAAGGAAACCCGAAAGTTACGTAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTATTACCTGGATCAATGTTTAACCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGGGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATTGTTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.633

99.655

0.534
  dprA Staphylococcus aureus N315

53.472

99.31

0.531
  dprA Streptococcus mutans UA159

36.426

100

0.366

Multiple sequence alignment