Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACM0O0_RS15920 Genome accession   NZ_CP180689
Coordinates   3397636..3398040 (-) Length   134 a.a.
NCBI ID   WP_416040675.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3392636..3403040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS15890 - 3392720..3392989 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ACM0O0_RS15895 rapZ 3392986..3393837 (-) 852 WP_005066272.1 RNase adapter RapZ -
  ACM0O0_RS15900 panC 3393861..3394709 (-) 849 WP_062849719.1 pantoate--beta-alanine ligase -
  ACM0O0_RS15905 panB 3394713..3395522 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACM0O0_RS15910 folK 3395568..3396050 (-) 483 WP_416040674.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACM0O0_RS15915 pcnB 3396047..3397510 (-) 1464 WP_016144357.1 polynucleotide adenylyltransferase PcnB -
  ACM0O0_RS15920 comEA 3397636..3398040 (-) 405 WP_416040675.1 ComEA family DNA-binding protein Machinery gene
  ACM0O0_RS15925 mazG 3398009..3398824 (-) 816 WP_416040676.1 nucleoside triphosphate pyrophosphohydrolase -
  ACM0O0_RS15930 - 3398937..3399710 (+) 774 WP_416040677.1 SDR family oxidoreductase -
  ACM0O0_RS15935 - 3399749..3402055 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15454.70 Da        Isoelectric Point: 10.4153

>NTDB_id=1097471 ACM0O0_RS15920 WP_416040675.1 3397636..3398040(-) (comEA) [Acinetobacter lactucae isolate nanjing]
MQLSMNLWKNKHYIFITLFWSLISSTFVQAQSFDQNFKEWKAKQQIYDQKLSMQHSSHSNVSKSSAMTDSSGQIHLNQAN
LDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKVRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1097471 ACM0O0_RS15920 WP_416040675.1 3397636..3398040(-) (comEA) [Acinetobacter lactucae isolate nanjing]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACTATATTTTTATTACTCTATTTTGGAGCCTGATTTCATCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCGAAGCAACAGATATATGATCAGAAGTTGAGTATGC
AGCATTCCTCTCATTCTAATGTTTCAAAAAGCTCAGCTATGACTGATTCATCAGGGCAAATTCACTTGAATCAAGCTAAT
CTTGATGAGCTGCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAAAATAAAGTGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396

Multiple sequence alignment