Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACM0O0_RS12900 Genome accession   NZ_CP180689
Coordinates   2748010..2748717 (+) Length   235 a.a.
NCBI ID   WP_016141682.1    Uniprot ID   A0A151YV95
Organism   Acinetobacter lactucae isolate nanjing     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2743010..2753717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS12875 clpB 2743163..2745742 (-) 2580 WP_005070314.1 ATP-dependent chaperone ClpB -
  ACM0O0_RS12880 - 2746042..2746851 (+) 810 WP_416040495.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACM0O0_RS12885 - 2746848..2747053 (-) 206 Protein_2523 hypothetical protein -
  ACM0O0_RS12890 - 2747149..2747571 (-) 423 WP_004642007.1 OsmC family protein -
  ACM0O0_RS12895 - 2747650..2747769 (-) 120 WP_078224862.1 hypothetical protein -
  ACM0O0_RS12900 crp 2748010..2748717 (+) 708 WP_016141682.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACM0O0_RS12905 - 2748877..2749926 (+) 1050 WP_216969217.1 NADP(H)-dependent aldo-keto reductase -
  ACM0O0_RS12910 - 2749982..2750761 (-) 780 WP_016143296.1 M48 family metallopeptidase -
  ACM0O0_RS12915 - 2750877..2751194 (-) 318 WP_031947796.1 hypothetical protein -
  ACM0O0_RS12920 - 2751316..2752635 (-) 1320 WP_002121613.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26522.10 Da        Isoelectric Point: 4.6573

>NTDB_id=1097467 ACM0O0_RS12900 WP_016141682.1 2748010..2748717(+) (crp) [Acinetobacter lactucae isolate nanjing]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENPVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1097467 ACM0O0_RS12900 WP_016141682.1 2748010..2748717(+) (crp) [Acinetobacter lactucae isolate nanjing]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCCCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCATGAACTTAGCAAACAATACCCAGACCTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACTCGTAAGATGACAGATCTTGCGTTCATTGATGTTTCTGGTCGTATTGCTCGTTGTTTAATCGAT
CTATCTTCTCAGCCAGAAGCAATGATTTTGCCGAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGCTCACGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCTA
TTCTTATTTTTGATGCTTCATTAGAAGAAAACCCTGTTTCTGATGATGACTACGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YV95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.872

100

0.979
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment