Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   HV95_RS03610 Genome accession   NZ_CP008864
Coordinates   757792..758436 (-) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa strain W60856     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 752792..763436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV95_RS03590 (HV95_29355) - 753872..754828 (+) 957 WP_031690356.1 helix-turn-helix domain-containing protein -
  HV95_RS03595 (HV95_29360) - 755241..755846 (+) 606 WP_031690357.1 aminodeoxychorismate/anthranilate synthase component II -
  HV95_RS03600 (HV95_29365) trpD 755848..756897 (+) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  HV95_RS03605 (HV95_29370) trpC 756894..757730 (+) 837 WP_003085205.1 indole-3-glycerol phosphate synthase TrpC -
  HV95_RS03610 (HV95_29375) crp 757792..758436 (-) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  HV95_RS03615 (HV95_29380) - 758708..759130 (+) 423 WP_003085219.1 OsmC family protein -
  HV95_RS03620 (HV95_29385) speD 759450..760244 (+) 795 WP_003101641.1 adenosylmethionine decarboxylase -
  HV95_RS03625 (HV95_29390) coq7 760299..760946 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  HV95_RS03630 (HV95_29395) - 761046..761384 (-) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  HV95_RS03635 (HV95_29400) - 761463..762944 (+) 1482 WP_003101642.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=109692 HV95_RS03610 WP_003085214.1 757792..758436(-) (crp) [Pseudomonas aeruginosa strain W60856]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=109692 HV95_RS03610 WP_003085214.1 757792..758436(-) (crp) [Pseudomonas aeruginosa strain W60856]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGCGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505