Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACMZ68_RS02820 Genome accession   NZ_CP180522
Coordinates   598747..599151 (+) Length   134 a.a.
NCBI ID   WP_126645439.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP5091     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593747..604151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS02805 (ACMZ68_02805) relA 594733..597039 (+) 2307 WP_002117181.1 RelA/SpoT family protein -
  ACMZ68_RS02810 (ACMZ68_02810) - 597086..597859 (-) 774 WP_064785485.1 SDR family oxidoreductase -
  ACMZ68_RS02815 (ACMZ68_02815) mazG 597972..598778 (+) 807 WP_415871709.1 nucleoside triphosphate pyrophosphohydrolase -
  ACMZ68_RS02820 (ACMZ68_02820) comEA 598747..599151 (+) 405 WP_126645439.1 ComEA family DNA-binding protein Machinery gene
  ACMZ68_RS02825 (ACMZ68_02825) pcnB 599277..600740 (+) 1464 WP_002117192.1 polynucleotide adenylyltransferase PcnB -
  ACMZ68_RS02830 (ACMZ68_02830) folK 600737..601219 (+) 483 WP_057069919.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACMZ68_RS02835 (ACMZ68_02835) panB 601265..602074 (+) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACMZ68_RS02840 (ACMZ68_02840) panC 602078..602926 (+) 849 WP_032057513.1 pantoate--beta-alanine ligase -
  ACMZ68_RS02845 (ACMZ68_02845) rapZ 602950..603801 (+) 852 WP_005066272.1 RNase adapter RapZ -
  ACMZ68_RS02850 (ACMZ68_02850) - 603798..604067 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15471.71 Da        Isoelectric Point: 10.6010

>NTDB_id=1096180 ACMZ68_RS02820 WP_126645439.1 598747..599151(+) (comEA) [Acinetobacter pittii strain AP5091]
MQFNMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQRCDQNLSMQRSAHSNSPKNSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1096180 ACMZ68_RS02820 WP_126645439.1 598747..599151(+) (comEA) [Acinetobacter pittii strain AP5091]
ATGCAGTTCAACATGAATCTTTGGAAGAATAAGCACAATATTTTTATTATTTTATTTTGGAGCCTGATCTCATCGACGCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGAGGTGTGATCAGAATTTGAGCATGC
AGCGATCCGCTCATTCTAATAGCCCAAAAAATTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCCGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

67.153

100

0.687
  comEA Acinetobacter baumannii D1279779

66.423

100

0.679
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403

Multiple sequence alignment