Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACMXYI_RS14460 Genome accession   NZ_CP180481
Coordinates   3140134..3142356 (+) Length   740 a.a.
NCBI ID   WP_415773697.1    Uniprot ID   -
Organism   Pseudomonas sp. LB3P38     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3135134..3147356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYI_RS14435 - 3136263..3136922 (+) 660 WP_415773692.1 transglutaminase-like domain-containing protein -
  ACMXYI_RS14440 - 3136966..3137589 (+) 624 WP_415773693.1 glutathione S-transferase family protein -
  ACMXYI_RS14445 - 3137723..3138655 (+) 933 WP_415773694.1 ABC transporter ATP-binding protein -
  ACMXYI_RS14450 - 3138652..3139431 (+) 780 WP_415773695.1 ABC transporter permease -
  ACMXYI_RS14455 - 3139477..3139998 (-) 522 WP_415773696.1 DUF2062 domain-containing protein -
  ACMXYI_RS14460 comA 3140134..3142356 (+) 2223 WP_415773697.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMXYI_RS14465 exbB 3142455..3143090 (+) 636 WP_033056924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMXYI_RS14470 - 3143087..3143518 (+) 432 WP_415773698.1 ExbD/TolR family protein -
  ACMXYI_RS14475 lpxK 3143518..3144528 (+) 1011 WP_415773699.1 tetraacyldisaccharide 4'-kinase -
  ACMXYI_RS14480 - 3144554..3144739 (+) 186 WP_007945752.1 Trm112 family protein -
  ACMXYI_RS14485 kdsB 3144736..3145500 (+) 765 WP_415773700.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMXYI_RS14490 - 3145500..3145964 (+) 465 WP_046049063.1 low molecular weight protein-tyrosine-phosphatase -
  ACMXYI_RS14495 murB 3145961..3146980 (+) 1020 WP_415773701.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 81490.79 Da        Isoelectric Point: 10.1761

>NTDB_id=1096105 ACMXYI_RS14460 WP_415773697.1 3140134..3142356(+) (comA) [Pseudomonas sp. LB3P38]
MRTGMMALALGLLILRFLPVLPPVWLWMLLPVIGLMLLPFRSYPLAFFLFGLSWAGANAQWALDDRLSVSLDGETRWVEG
RVTGLPQNNEAVVRFELADARSRHGKVPKLLRLAWYDGPPVNSGEYWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGQRLKEAQWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHVGLLAGLVYLL
IAGLARYGLWPKRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALDGVLVLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWSWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPVANLLAVPWISLVVLPPAL
LGTLFLPLPYVGEGLLWLAGGLIDLLFKGLALMAGYLPAWVPVAIPLWIWALGTLGAFLLLMPRGVPFRSLGWPMLLLLV
FPPRQVLPEGIAEIWQLDVGQGLAILVRTRHHTLLYDTGPRFGDFDLGERVVLPTLRKLGVNGLDLMLISHADADHAGGA
RAVANGLPVKRVVSGDPLALPAELQAEGCESGKQWVWDDVRFQLWQWSSASDSNQKSCVLQIEANGERLLLTGDIDAAAE
RALLDSPLAVTTDWLQAPHHGSRSSSSMALLSGLQPKAVLISRGQGNSFGHPHPTIMARYRKRGMSIHDSAEQGAIRLQL
GRFKPPWTMRQERRFWRSAQ

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1096105 ACMXYI_RS14460 WP_415773697.1 3140134..3142356(+) (comA) [Pseudomonas sp. LB3P38]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGTTGATCCTGCGTTTTTTACCGGTATTACCGCCGGTCTGGTTATG
GATGTTGCTGCCGGTAATCGGTTTGATGTTGCTGCCGTTTCGCAGCTATCCACTGGCATTTTTCCTGTTCGGCCTCAGTT
GGGCAGGCGCGAATGCACAGTGGGCGCTGGATGATCGGCTGTCGGTGAGCCTCGATGGCGAAACCCGTTGGGTCGAAGGT
CGGGTGACGGGATTGCCCCAGAACAATGAGGCCGTCGTGCGATTCGAGTTGGCGGACGCCCGGTCGCGACATGGCAAGGT
GCCGAAACTGCTGCGCCTGGCGTGGTATGACGGGCCGCCGGTCAACAGCGGCGAATATTGGCGACTGGCGGTCAAGTTGA
AGCGTCCTGCGGGGCTGCTCAATCCCCATGCCTTCGATTACGACGCCTGGCTGCTGGCGCAACGTATCGGCGCTACCGGG
ACGGTCAAGGATGGCCAGCGACTCAAGGAAGCCCAATGGGCCTGGCGCGACGGCATCCGTCAGCGCTTGCAGGCCGTGGA
TGCTCAGGGGCGAACGGGCGCGCTGACGGCGTTGGTGCTGGGGGACGGCGCCGGACTGAGTCGCGAAGACTGGCAGGTGC
TGCAAGACACCGGCACCGTCCATCTGTTGGTGATTTCCGGACAGCACGTCGGTTTGTTGGCAGGGCTGGTGTATTTGCTG
ATCGCCGGGCTGGCCCGTTATGGCCTGTGGCCGAAACGCTTGCCTTGGCTGCCGTGGGCCTGTGGACTGGCGTTCGCCGC
GGCGCTCGGTTACGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGGGCCTGCGTGATGATCGGTCTGGTGCTGTTGT
GGCGTCTGCGATTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTTGACGGCGTTTTGGTGCTGGATCCGCTG
GCGAGTCTGCAACCGGGTTTCTGGCTGTCGTTCGCGGCGGTGGCGGTGTTGATCTTCACCTTCGGCGGTCGGCTGGGCCC
ATGGAGTTGGTGGCAAACATGGACCCGCGCCCAATGGCTGATCGCGATCGGTCTGTGCCCGTTGCTGCTGGTGCTCGGGT
TGCCGATCAGTCTCAGCGGGCCGGTGGCCAATTTGCTCGCGGTGCCGTGGATCAGTCTGGTGGTGCTGCCTCCGGCATTG
CTGGGTACGTTGTTTTTGCCTCTTCCATACGTGGGCGAAGGGCTGCTGTGGCTGGCAGGAGGTTTGATCGACCTATTGTT
CAAGGGCCTGGCCCTGATGGCCGGGTACTTGCCCGCGTGGGTGCCGGTGGCCATCCCGTTGTGGATATGGGCACTCGGCA
CACTCGGTGCCTTTCTACTATTGATGCCTCGAGGTGTGCCGTTTCGCTCGTTGGGTTGGCCGATGCTGCTGTTGCTGGTT
TTTCCACCCAGGCAGGTCTTGCCTGAAGGCATCGCCGAAATCTGGCAGCTGGATGTCGGCCAGGGTTTGGCCATCCTGGT
GCGCACCCGTCATCACACACTGTTGTATGACACCGGGCCACGTTTCGGCGATTTCGACCTGGGCGAGCGGGTGGTGCTGC
CGACATTACGCAAACTGGGCGTGAATGGACTCGATTTGATGTTGATCAGCCATGCTGACGCCGATCACGCGGGCGGCGCC
CGGGCCGTTGCCAATGGCCTGCCGGTGAAACGGGTGGTCAGTGGCGATCCCCTGGCGCTGCCGGCCGAGTTGCAGGCAGA
AGGCTGCGAGAGCGGCAAGCAATGGGTCTGGGATGATGTACGGTTCCAGCTCTGGCAATGGTCTTCGGCCAGCGACAGCA
ATCAAAAATCCTGCGTCCTGCAGATAGAAGCCAACGGTGAACGTCTGTTATTGACCGGTGATATAGATGCCGCAGCCGAG
CGGGCGCTGCTCGACAGTCCACTGGCCGTCACCACCGATTGGTTGCAGGCTCCGCACCATGGCAGTCGCAGTTCATCTTC
CATGGCGCTGCTTTCCGGGTTGCAACCCAAAGCGGTGTTGATCTCCCGCGGCCAGGGCAATTCATTCGGACATCCCCATC
CCACGATCATGGCGCGCTATCGAAAACGCGGCATGTCGATCCATGACAGCGCCGAGCAGGGTGCCATCCGTCTGCAACTG
GGACGCTTCAAGCCGCCATGGACGATGCGTCAAGAACGGCGTTTCTGGCGCTCTGCGCAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.268

96.757

0.612
  comA Ralstonia pseudosolanacearum GMI1000

32.66

100

0.372

Multiple sequence alignment