Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMXYI_RS14465 Genome accession   NZ_CP180481
Coordinates   3142455..3143090 (+) Length   211 a.a.
NCBI ID   WP_033056924.1    Uniprot ID   A0A059L319
Organism   Pseudomonas sp. LB3P38     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3137455..3148090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYI_RS14445 - 3137723..3138655 (+) 933 WP_415773694.1 ABC transporter ATP-binding protein -
  ACMXYI_RS14450 - 3138652..3139431 (+) 780 WP_415773695.1 ABC transporter permease -
  ACMXYI_RS14455 - 3139477..3139998 (-) 522 WP_415773696.1 DUF2062 domain-containing protein -
  ACMXYI_RS14460 comA 3140134..3142356 (+) 2223 WP_415773697.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMXYI_RS14465 exbB 3142455..3143090 (+) 636 WP_033056924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMXYI_RS14470 - 3143087..3143518 (+) 432 WP_415773698.1 ExbD/TolR family protein -
  ACMXYI_RS14475 lpxK 3143518..3144528 (+) 1011 WP_415773699.1 tetraacyldisaccharide 4'-kinase -
  ACMXYI_RS14480 - 3144554..3144739 (+) 186 WP_007945752.1 Trm112 family protein -
  ACMXYI_RS14485 kdsB 3144736..3145500 (+) 765 WP_415773700.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMXYI_RS14490 - 3145500..3145964 (+) 465 WP_046049063.1 low molecular weight protein-tyrosine-phosphatase -
  ACMXYI_RS14495 murB 3145961..3146980 (+) 1020 WP_415773701.1 UDP-N-acetylmuramate dehydrogenase -
  ACMXYI_RS14500 - 3147225..3147695 (+) 471 WP_008152370.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22898.06 Da        Isoelectric Point: 7.3616

>NTDB_id=1096106 ACMXYI_RS14465 WP_033056924.1 3142455..3143090(+) (exbB) [Pseudomonas sp. LB3P38]
MWELVKSGGWMMIPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVVHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLNGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1096106 ACMXYI_RS14465 WP_033056924.1 3142455..3143090(+) (exbB) [Pseudomonas sp. LB3P38]
GTGTGGGAATTGGTCAAATCCGGCGGATGGATGATGATACCGATCATTCTGAGTTCCATCGCAGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTCAATAAAGACAAACTCAAGGAACTGCGCGCCAACTCGCCGTTGGGGGAGATCCTGGCCGCTGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATAGAAGAAGCCGCCGCGCGAGTGGTTCACGAGCTCGAACGCTACAT
CAATGCGTTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGTCTGTTGGGGACGGTGTTGGGCATGATCGATATCTTCA
GCGCATTCATGGGTTCGGGCATGACCACCAACGCTGCCGTGTTGGCCGGTGGTATCTCCAAAGCCCTGATTACTACGGCC
GCAGGCCTGATGGTCGGCATCCCGGCGGTATTCTTCCACCGGTTCCTGCAACGCCGGATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTCGTCGAGGTGGTGCAGGGTGACCGTGATGTTGACCTGAATGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059L319

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment