Detailed information NTG1096090

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACMXYI_RS02580
• Genome accession: NZ_CP180481
• Coordinates: 534673..536013 (+)
• Length: 446 a.a.
• NCBI ID: WP_415771493.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LB3P38
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 529673..541013

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYI_RS02555	pgeF	529877..530602 (-)	726	WP_415771488.1	peptidoglycan editing factor PgeF	-
ACMXYI_RS02560	rluD	530599..531561 (-)	963	WP_415771489.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACMXYI_RS02565	-	531713..532735 (+)	1023	WP_415771490.1	outer membrane protein assembly factor BamD	-
ACMXYI_RS02570	-	532858..533091 (+)	234	WP_008154904.1	PP0621 family protein	-
ACMXYI_RS02575	pilS	533081..534670 (+)	1590	WP_415771491.1	sensor histidine kinase	Regulator
ACMXYI_RS02580	pilR	534673..536013 (+)	1341	WP_415771493.1	sigma-54-dependent transcriptional regulator	Regulator
ACMXYI_RS02585	thiO	536017..537117 (-)	1101	WP_415771495.1	glycine oxidase ThiO	-
ACMXYI_RS02590	-	537174..537575 (-)	402	WP_415771497.1	type IV pilin protein	-
ACMXYI_RS02595	-	537590..540646 (-)	3057	WP_415771499.1	pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49723.99 Da
• Isoelectric Point: 6.5107

>NTDB_id=1096090 ACMXYI_RS02580 WP_415771493.1 534673..536013(+) (pilR) [Pseudomonas sp. LB3P38]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLSRESFDLCLTDMRLPDGTGLELVQHIQQRHPNVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVNSALRLPAPGSPGIAIDRRLLGDSPPMRALRKHIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRASQPFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRGVGEQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERREDIESLASH
VLKRLAISTGQPAAKLHPQALDALKSYRFPGNVRELENVLERAHTLCENKQIEASDLRLAEGNCNPEGGVPDLTQIDNLE
DYLENVERNLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=1096090 ACMXYI_RS02580 WP_415771493.1 534673..536013(+) (pilR) [Pseudomonas sp. LB3P38]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGTGCCCGCAACCTCGGCGAAGCCCAGGCCCTGCTGTCGCGAGAGTCGTTCGATTTGTGCCTCA
CCGACATGCGCCTGCCGGACGGCACCGGCCTTGAGCTGGTGCAACACATCCAGCAACGCCACCCAAACGTACCGGTGGCA
ATGATCACCGCTTATGGCAGCCTGGAAACGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAACCGGT
GGACCTCACTCGCCTGCGGGAACTGGTCAACAGCGCGCTTCGGTTGCCTGCGCCGGGCAGCCCCGGCATCGCCATCGATC
GTCGGCTCCTGGGCGATTCACCGCCAATGCGCGCCTTGCGCAAACACATCGACAAACTGGCCCGCAGCCAGGCGCCGGTG
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAATTGGTCGCGCGACTGATCCATGAACAAGGCCCCCGCGCCAGCCAACC
GTTTATCCCGGTCAATTGCGGGGCGATTCCGTCGGAATTGATGGAGAGCGAGTTTTTCGGTCATCGCAAAGGCAGCTTCA
GCGGTGCCATCGAAGACAAACCCGGACTGTTCCAGGCGGCCCATGGCGGCACCCTGTTTCTCGACGAAGTAGCTGATTTG
CCGCTGGCGATGCAGGTCAAACTGCTACGGGCAATACAAGAAAAAGCCGTTCGCGGTGTCGGCGAGCAACAGGAAACCGT
GGTCGATGTGCGTATCCTTTGCGCCACCCACAAAGATCTCGACGCCGAAGTCGCCGCCGAACGCTTTCGCCAGGATTTGT
ACTACCGGTTGAACGTGATCGAACTACGGGTGCCGCCCTTGCGCGAACGCCGTGAAGACATCGAATCCCTCGCCAGCCAC
GTGCTCAAGCGCCTGGCCATCAGCACTGGCCAACCCGCTGCAAAACTCCACCCCCAAGCCCTCGACGCGCTGAAAAGCTA
TCGCTTCCCCGGCAATGTGCGGGAACTGGAGAACGTGCTCGAACGGGCTCACACGTTGTGCGAAAACAAACAAATTGAAG
CCAGCGACCTGCGACTGGCCGAAGGCAACTGCAACCCGGAAGGCGGTGTGCCGGACCTGACGCAGATCGACAACCTGGAA
GACTACCTGGAAAACGTCGAGCGCAACCTTATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAATCTTTCATTCCGGTCGATGCGCTACAGGCTCAAGAAACTGGGACTCGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.458	99.327	0.789
pilR	Acinetobacter baumannii strain A118	49.02	100	0.504